Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0084
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   9.2  
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)               28   9.2  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 28   9.2  

>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 136  AGADTGTLHYG*TPYCY*KSFNQQINLSILCKNSNIANAP 17
            A +D   L+ G   +    SF+QQI L  L +  NIAN P
Sbjct: 1327 ASSDLTQLNEGFIEFMRNPSFSQQIRLRKLLETVNIANVP 1366


>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
          Length = 655

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 88  NNKAFNHSGAFLYPRPRTSLALHQT 162
           N+K   HSGA + P P+ + +LH T
Sbjct: 320 NDKGVEHSGASVVPAPQAADSLHAT 344


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 21  AFAMFEFLHKIDRFICW 71
           AFA+ EFL K D ++CW
Sbjct: 683 AFAITEFLRKEDSYMCW 699


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,789,887
Number of Sequences: 59808
Number of extensions: 352535
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)