Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0073
(346 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.58
SB_58661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_39991| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_25210| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06) 28 2.3
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 28 2.3
SB_2258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_3321| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_2297| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_22083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022) 27 5.4
SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12) 26 7.1
SB_47953| Best HMM Match : DUF911 (HMM E-Value=9.5) 26 7.1
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 26 7.1
SB_20550| Best HMM Match : Phosphodiest (HMM E-Value=0) 26 9.4
>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 29.9 bits (64), Expect = 0.58
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 27 KWSEWFSIGQPLLLSQPGAIWTLPLTCSSLRHQM 128
+W ++ G PL + PGA+ LP+ CS + ++
Sbjct: 1052 RWGDYVVCGDPLTVRAPGAV-LLPVKCSKVEDEL 1084
>SB_58661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 29.5 bits (63), Expect = 0.77
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 51 GQPLLLSQPGAIWTLPLTCSSL-RHQMHPGDCDLF 152
G L +P + P C+SL RH HPGDC F
Sbjct: 34 GSAALGYKPPQLAVQPNDCASLGRHMYHPGDCYSF 68
>SB_39991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.5 bits (63), Expect = 0.77
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 189 ALLKWSYTFSCTKIDRSLQGAFGDEAMNMSTAESRSHRAVTTAV 58
A++ WSYT+ C K ++ L + E + S S RA TAV
Sbjct: 17 AIVSWSYTYCCNKCEKHLPPSVIIEF--LQPGGSTSSRAAATAV 58
>SB_25210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.5 bits (63), Expect = 0.77
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 169 VRPFQKSHEVETRLGMLGEKAGYR--NK*PYVRNQGEKVYLRLHGAR*RRRNHD 324
VR + + H V + M + R N YVR Q +VY+R+H R R H+
Sbjct: 8 VRVYVRMHNVRVYVRMQNVRVYVRMHNVRVYVRMQNVRVYVRMHNVRVHVRMHN 61
Score = 25.8 bits (54), Expect = 9.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 163 KRVRPFQKSHEVETRLGMLGEKAGYR--NK*PYVRNQGEKVYLRLHGAR*RRRNHD 324
+ VR + + H V + M + R N +VR +VY+R+H R R H+
Sbjct: 42 QNVRVYVRMHNVRVHVRMHNVRVHVRMHNVRVHVRMHNVRVYVRMHNVRVYVRMHN 97
>SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)
Length = 378
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 282 INFFPLISYV--RSLISIPGFFSEHPKSCFHFMALLKWSYTFSCTKIDRSLQGAFGDEAM 109
+ +FPL++ R I PG P HF+ L+ S S +D S A +E
Sbjct: 254 MKYFPLLAQTTPRQCILEPGELLFVPHGSPHFVENLEDSLAVSANFVDLSNHSAVLEELG 313
Query: 108 NMSTAESRS 82
NM+ A+ ++
Sbjct: 314 NMAIADPQA 322
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 43 NHSLHLSLASCPPP 2
+H LHLS SCPPP
Sbjct: 236 SHVLHLSTQSCPPP 249
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 52 PIENHSLHLSLASCPPP 2
P H HLS SCPPP
Sbjct: 15 PTSIHVRHLSTQSCPPP 31
>SB_2258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 158 QEN-VYDHFKRAMKWKHDLGCSEKKPGIEISDLTY 259
QEN +YD+ K GC+++ GI+++DLT+
Sbjct: 36 QENGIYDYQDSTATAKGTSGCAKQTVGIQMTDLTW 70
>SB_3321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 143 RSILVQ-ENVYDHFKRAMKWKHDLGCSEKKPG 235
++IL Q E+ + HF A+ W C +KKPG
Sbjct: 245 KTILSQSESRFVHFPMAILWTKTRQCRDKKPG 276
>SB_2297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 62 AVVTARCDLDSAVDMFIASSPNAPWRLRSILVQENVYDHFKRAMKW 199
A+ R L+ V +F APW L S +++ +F ++ KW
Sbjct: 124 AITLTRHKLEGKVPLF--GFTGAPWTLMSYMIEGGGSTNFTKSRKW 167
>SB_22083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 6 GGHEARLKWSEWFSIGQPLLLSQPGAIWT 92
GG+E +L+ S S G PL+L +P W+
Sbjct: 11 GGNEWKLELSNSCSPGDPLVLERPPPRWS 39
>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
Length = 720
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 38 MVFNRATTAVVTARCDLDSAVDMFIASSPNAPWRLRS 148
M+ NRA T V L ++V++F +S + PW L S
Sbjct: 438 MILNRAGTINVLFGIILVTSVNLFCSSFISGPWHLVS 474
>SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12)
Length = 440
Score = 26.2 bits (55), Expect = 7.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +2
Query: 56 TTAVVTARCDLDSAVDM-FIASSPNAPWRLRSILVQENVYDHFKRAMKWKHDLG-CSEKK 229
++ VT D ++V++ IA P+ LRS L +E V ++FK + K G C K+
Sbjct: 50 SSLAVTRSGDKGNSVNIGVIARHPSYVPFLRSALTEEAVEEYFKHLFETKPQKGHCRVKR 109
Query: 230 ---PGIEISDLTYE 262
PGI + E
Sbjct: 110 YELPGINAFNFILE 123
>SB_47953| Best HMM Match : DUF911 (HMM E-Value=9.5)
Length = 237
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 158 QENVYDHFKRAMKWKHDLGCSEKKPGI-EISDLTYEIKGKKFIFDYTGRGDAAGITIE 328
+EN ++ F + ++W + GC K + E + + IK I GR D G +E
Sbjct: 38 RENKWELFVQGIRWSKE-GCKSKSESLHETTSTSNTIKTSGKIKSSRGRRDRRGNDVE 94
>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1963
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 125 NAPWRLRSILVQENVYDHFKRAMKWKHDLGCSEKKPGIEISDLT 256
N WR ++LV+ + ++ MK + GCS I + LT
Sbjct: 611 NVTWRRSAVLVELACQERYEVEMKMCNSAGCSGISNRITLEALT 654
>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1885
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 198 GNTTWDARRKSRVSK*VTLRTKSRGKSLSSITRGAVTPPE 317
GN+T +A+RKS + +T+ + S G L+S R + PP+
Sbjct: 1669 GNSTPEAQRKSSLPATLTVPSFSHGPLLTS-DRQLLVPPQ 1707
>SB_20550| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 579
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 288 SKINFFPLISYVRSLISIPGFFSEHP 211
S I FPL+ + S++S+ FS+HP
Sbjct: 3 STILLFPLVFLLTSVLSLALCFSDHP 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,338
Number of Sequences: 59808
Number of extensions: 258741
Number of successful extensions: 863
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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