Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0064
(526 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1) 29 2.3
SB_27454| Best HMM Match : Lipase_GDSL (HMM E-Value=0.091) 29 2.3
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 29 3.1
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 29 3.1
SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012) 28 4.1
SB_25378| Best HMM Match : CNH (HMM E-Value=0.037) 28 4.1
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23) 28 5.4
SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9) 27 7.2
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 27 7.2
SB_47019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 27 9.5
>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
Length = 370
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 371 LYNEDRPCPRDCICSVSQGYRQAK 442
L N + CP C C +S+GYR +K
Sbjct: 119 LDNVGKLCPSHCFCLLSRGYRASK 142
>SB_27454| Best HMM Match : Lipase_GDSL (HMM E-Value=0.091)
Length = 522
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 41 DWRRHYSQSIRTNVTVCQLF 100
DWR Y+QS+ N+TV + F
Sbjct: 333 DWREGYAQSLEANITVSEKF 352
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 329 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 499
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 490 EQLEDNPTVPLEEHIDNEGRKCKRQKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 545
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 291 KPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGP 392
K SRKTKT + +++ RNTK T+T P
Sbjct: 89 KTSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKP 122
>SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)
Length = 247
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 329 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 499
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 115 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 170
>SB_25378| Best HMM Match : CNH (HMM E-Value=0.037)
Length = 346
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 272 FGESINKTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGY 430
F ES+ + + D +++ +ED P+++++ L D P P+ + +GY
Sbjct: 286 FDESLQLFARLETDPTHVIGLFEDLLPSDFRKQLEYPDEP-PKLLMSETEKGY 337
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 329 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 499
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 1089 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKPTQKAKKFKFNVYDIV 1144
>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 491
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 329 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 499
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 359 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKPTQKAKKFKFNVYDIV 414
>SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9)
Length = 174
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 329 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 499
+Q ED +E NE R C R IC + Y + K +KF ++ D+V
Sbjct: 42 EQLEDNPTVPLEEHTDNEGRKCKRQKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 97
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 329 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 499
+Q ED +E NE R C R IC + Y + K +KF ++ D+V
Sbjct: 540 EQLEDNPTVPLEEHTDNEGRKCKRQKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 595
>SB_47019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +2
Query: 350 PAEYQEVLYNEDRPCPRDCI------CSVSQGYRQAKCSFLEIGTQKFGDDILDLVVEN 508
P EY + N++RP P I C +SQG +++ +E+G G+ + D +EN
Sbjct: 37 PEEYDPLALNKNRPGPLKAITTKLDDCLISQGATRSEEDRIELGCIT-GERMPDKEIEN 94
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 386 CPRCTKPLGIPRVRNPHI 333
CP C KP+ +PR + P I
Sbjct: 36 CPLCNKPVPVPRGQQPDI 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,804
Number of Sequences: 59808
Number of extensions: 354886
Number of successful extensions: 1215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -