Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0062
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   3.6  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    29   4.8  

>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 273 GIVFKVVCKCSALLLPWRSRCVFKMALFHFIPFRKHNTNMPHNRLPVSINLLNSMQYLCS 452
           G++ +V  + +A+L+  R +CVF         F + +    H+R  V  N  N + +L S
Sbjct: 553 GLLGEVRRRIAAVLIVHRHQCVFAYVRLRLFAFARLHYPTLHSRRVVDTNNANRLHFLTS 612


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +2

Query: 494  NYSANLQC---GTIFAVKRKKAKLNFVSFSFTRSTVTQPEK*FTLQKIHSTYIIKLITKN 664
            NYS NL      T  +V  +  +LNF   S TRST+  P K F L+   ++Y+ +L  K 
Sbjct: 1711 NYSVNLTITFTATDNSVSSRCGELNFTGLSGTRSTIGLPLKEF-LE--GASYVFRL--KI 1765

Query: 665  IRDCR 679
            ++D R
Sbjct: 1766 LKDAR 1770


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,029
Number of Sequences: 59808
Number of extensions: 364921
Number of successful extensions: 1515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)