Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0060
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08) 42 6e-04
SB_38798| Best HMM Match : UPF0004 (HMM E-Value=2.8) 30 1.9
SB_9976| Best HMM Match : PIP5K (HMM E-Value=2) 29 2.5
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_38477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_10880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031) 28 7.7
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007) 28 7.7
>SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)
Length = 800
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +2
Query: 26 LSESEREC----ARMAQLSELLKAELRRV-RGTTQNAHNTEYMKNVTLKFLTLPSGDERI 190
L + R+C A+ E LK E+R++ R ++ N EY+KN+ L+F+ S +
Sbjct: 501 LEDDLRDCTLREAKTRDQCETLKEEIRKLERDRSRETANLEYLKNIILRFMMTTSYSVKE 560
Query: 191 RLVPVLQKILTLTPDETQK 247
+++ + IL +P E Q+
Sbjct: 561 QMITAIATILQFSPKEVQQ 579
>SB_38798| Best HMM Match : UPF0004 (HMM E-Value=2.8)
Length = 169
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 194 LVPVLQKILTLTPDETQKIQAIAKGLDPNS 283
LVPVL+KI++ + D+ + + AIAK +P +
Sbjct: 8 LVPVLEKIISNSSDKPKTVTAIAKNDNPKN 37
>SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)
Length = 673
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 185 RIRLVPVLQKILTLTPDETQKIQAIAKGLDPNSSKGWGSYLPWPG 319
++ +P+ +I+T+TP+E K+ IA G D + W G
Sbjct: 567 KVESLPIHDQIVTITPEEDIKLSRIANGDDQTKQQKSRFRREWKG 611
>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2061
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 185 RIRLVPVLQKILTLTPDETQKIQAIAKGLDPNSSKGWGSYLPWPG 319
++ +P+ +I+T+TP+E K+ IA G D + W G
Sbjct: 1477 KVESLPIHDQIVTITPEEDIKLSRIANGDDQTKQQKSRFRREWKG 1521
>SB_38477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 142 ERHSQVPNPSI------R*RAYSTCPSSSEDFDLDARRNSKNSSDCKRFRSK 279
+RH NPS+ R RA+ S +D DL++ RN +NS+ KR R +
Sbjct: 5 KRHLPWINPSVKRLMRKRDRAFKKAKRSGKDKDLNSYRNLRNSAS-KRIREE 55
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 245 FEFRLASRSKSSEELGQVEYARHR 174
FEF LASR+K+S+E V +A R
Sbjct: 274 FEFSLASRNKTSQEGASVSFAVSR 297
>SB_10880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 142 ERHSQVPNPSI------R*RAYSTCPSSSEDFDLDARRNSKNSSDCKRFRSK 279
+RH NPS+ R RA+ S +D DL++ RN +NS+ KR R +
Sbjct: 92 KRHLPWINPSVKRLMRKRDRAFKKAKRSGKDKDLNSYRNLRNSAS-KRIRDE 142
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 142 ERHSQVPNPSI------R*RAYSTCPSSSEDFDLDARRNSKNSSDCKRFRSK 279
+RH NPS+ R RA+ S +D DL++ RN +NS+ KR R +
Sbjct: 1340 KRHLPWINPSVKRLMRKRDRAFKKAKRSGKDKDLNSYRNLRNSAS-KRIREE 1390
>SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)
Length = 753
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 142 ERHSQVPNPSI------R*RAYSTCPSSSEDFDLDARRNSKNSSDCKRFRSK 279
+RH NPS+ R RA+ S +D DL++ RN +NS+ KR R +
Sbjct: 518 KRHLPWINPSVKRLMRKRDRAFKKAKRSGKDKDLNSYRNLRNSAS-KRIREE 568
>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
Length = 434
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 471 LYYSSFKITAVNQCGC-FEK-ICYVV*TSIRNIREVF*IEAYIFFFLSLKKYVNFIFNY 641
L+ + K+ VN C F K + Y + +N+ +VF I+ +F + S +K NF+ N+
Sbjct: 368 LFKNELKMVTVNVSMCQFAKHLRYGSPKNDKNVVQVFQIKMLVFLYGSDRKNDNFLLNF 426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,745,769
Number of Sequences: 59808
Number of extensions: 324420
Number of successful extensions: 773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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