Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0058
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41) 164 6e-41
SB_34059| Best HMM Match : PolyA_pol (HMM E-Value=0) 56 2e-08
SB_42819| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81) 32 0.45
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21) 30 1.8
SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22) 30 1.8
SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08) 30 1.8
SB_27452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_25532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22) 29 2.4
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22) 29 3.2
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_48893| Best HMM Match : CUB (HMM E-Value=0.11) 28 7.4
SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_33730| Best HMM Match : DUF1013 (HMM E-Value=6.3) 28 7.4
SB_6678| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-10) 28 7.4
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41)
Length = 466
Score = 164 bits (398), Expect = 6e-41
Identities = 83/156 (53%), Positives = 108/156 (69%)
Frame = +1
Query: 172 FRSKMDLNLKCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMG 351
+ SK ++ K R I D+ FK+I T E++ L +F K+ +E+RI GGAVRDLLMG
Sbjct: 41 YLSKFAVSSKRRMEGKTILADTEGFKAIHTPELLRLSSVFTKHGYELRIVGGAVRDLLMG 100
Query: 352 LTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARINDKENFEVTTLRIDMVT 531
PKD+D T ATPE+M +MF EE+R I G +HGT+TA IN K +FEVTTLRID+ T
Sbjct: 101 KLPKDIDLCTNATPEQMIKMFKDEEIRCIE-TGLQHGTLTAHIN-KTDFEVTTLRIDVET 158
Query: 532 DGRFADVQFTKDWKLDANRRDLTINSMFLGFDGSVY 639
DGR A V+FT DW+LDA RRDLT N+M + G++Y
Sbjct: 159 DGRHAKVKFTNDWQLDAERRDLTFNAMSVDLTGNLY 194
>SB_34059| Best HMM Match : PolyA_pol (HMM E-Value=0)
Length = 324
Score = 56.0 bits (129), Expect = 2e-08
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Frame = +1
Query: 166 RRFRSKMDLNLKCRENPIVIKVDS-PEFKSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDL 342
+ FRS + P V+ P + + I + + + ++ + GG VRDL
Sbjct: 7 KSFRSPIRRGNHSHSTPEVLSSSQHPIERGEISRYAISVVERLQQAGYQAYLVGGCVRDL 66
Query: 343 LMGLTPKDLDFATTATPEEMKEMFTAEEV-----RMINVNGERH--GTITARINDKENFE 501
L+ + PKD D AT+ATPE+++ F V ++++V+ R T T R N E E
Sbjct: 67 LLDIEPKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIETATFRANHPEGDE 126
Query: 502 VTTLRIDMVTD-GRFADVQFTKDWKLDANRRDLTINSMF 615
+ + GR + DA RRD TIN+++
Sbjct: 127 DENSNLSSRNESGRILRDNVYGSLEDDAQRRDFTINALY 165
>SB_42819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 36.3 bits (80), Expect = 0.021
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = +1
Query: 307 EIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARIND 486
E R A + L+ DL T A MK+ AE VRM + G GT+ A + D
Sbjct: 129 EKRKAESELAQCLVQALAVDLPIQTEALLAAMKDGMQAESVRMYYMQGGEPGTLLAAMKD 188
Query: 487 KENFE---VTTLRIDMVTDGRFADVQFTKDWKLDANRRDLTI 603
+ ++ + LRI T R V F+ ++L +R+ I
Sbjct: 189 ETGYDFDVIEKLRIQPSTRIRNRSVFFSFRFRLRIRQRNRRI 230
>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
Length = 468
Score = 31.9 bits (69), Expect = 0.45
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Frame = -2
Query: 614 NIEFIVRSLLLASSFQSLVN*TSAKRPSVTISILKVVTSKFSLSLIRAVIVPCLSPLTFI 435
N+ ++++ + SS LV +S VT+ + +VTS F +S + +T +
Sbjct: 41 NVTWVIKFI---SSLTRLVTYSSNVTRDVTV--ISIVTSIFRISSSVISVFTLSFSVTLV 95
Query: 434 ILTSSAVNISFISSGVAVVAKSRSFGVS---PIKRSLTAPPAILISCLYLSKIFFRSITS 264
+ S+V + ISS V V K SF V+ I S+T+ I S ++ + F S+T
Sbjct: 96 VTVISSVIVVTISSSVTSVVKV-SFSVTLVVTISSSVTSVVTISSSVTWVVTVSF-SVTW 153
Query: 263 SVNILLN 243
V + N
Sbjct: 154 VVTVSFN 160
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = -2
Query: 482 LIRAVIVPCLSPLTFIILTSSAVNISFISSGVAVVAKSRSFGVSPIKR----SLTAP-PA 318
L RAV V CL I+ AV++S + V+V R VS + R S++ P A
Sbjct: 205 LCRAVSVSCLYRDVSILCLYRAVSVSCLYRAVSVSCPYRVVSVSCLYRVSVVSVSCPCRA 264
Query: 317 ILISCLYLSKIFFRSITSSVNILL 246
+ +SCLY + S + V ++L
Sbjct: 265 VSVSCLYRAVPRIVSFSCCVRVVL 288
>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 197 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 105
++K+ + ++ +T P++WK+CPT +
Sbjct: 762 QWKTFVSNRVRKIAEITNETPITWKHCPTER 792
>SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21)
Length = 620
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 197 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 105
++K+ + ++ +T P++WK+CPT +
Sbjct: 278 QWKTFVSNRVRKIAEITNETPITWKHCPTER 308
>SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22)
Length = 664
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 197 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 105
++K+ + ++ +T P++WK+CPT +
Sbjct: 128 QWKTFVSNRVRKIAEITNETPITWKHCPTER 158
>SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08)
Length = 549
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 197 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 105
++K+ + ++ +T P++WK+CPT +
Sbjct: 16 QWKTFVSNRVRKIAEITNETPITWKHCPTER 46
>SB_27452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 197 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 105
++K+ + ++ +T P++WK+CPT +
Sbjct: 16 QWKTFVSNRVRKIAEITNETPITWKHCPTER 46
>SB_25532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 197 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 105
++K+ + ++ +T P++WK+CPT +
Sbjct: 18 QWKTFVSNRVRKIAEITNETPITWKHCPTER 48
>SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22)
Length = 1072
Score = 29.5 bits (63), Expect = 2.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -2
Query: 197 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 105
++K+ + ++ +T P++WK CPT +
Sbjct: 611 QWKTFVSNRVRKIAEITNETPITWKQCPTER 641
>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
Length = 1213
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 199 KCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIA 321
+C E PI+ V++P+FK + + L KI K K RIA
Sbjct: 61 ECFERPILDPVNAPKFKRMLKRDPFLLCKIRKKIKLRDRIA 101
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 262 EEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLT--PKDLDFATTATPEEMKEMFTAEEVRM 435
E V LK+ Y+HEIR +++ G T + L+ A T +KE E+VR
Sbjct: 399 ENVAQLKQQLQAYEHEIRNLKAELKNQKHGFTECKQSLESAITVLEGRIKE--REEQVR- 455
Query: 436 INVNGERHGTITARINDKENFE 501
N E H + + KE+FE
Sbjct: 456 -NELHEEHQYLMENLK-KEHFE 475
>SB_48893| Best HMM Match : CUB (HMM E-Value=0.11)
Length = 352
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 449 PLTFIILTSSAVNISFISSGVAVVAKSRSFGVSPIKRSLTAPPAI 315
P FI + VNI+FI++G ++V + G KR PP I
Sbjct: 182 PFFFIFGKAEFVNITFITNGDSLVRRGFVAGYIIYKRIPETPPEI 226
>SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 483
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +1
Query: 352 LTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARINDKENFEVTT---LRID 522
+T +D T + TAE+ ++ N+ E D++ +++TT D
Sbjct: 131 ITAEDRQVYDMTTEDRQVYDITAEDRQVYNITAEDRQVYDITTEDRQVYDITTEDRQVYD 190
Query: 523 MVTDGRFADVQFTKDWKL 576
+ T+ R T+DW++
Sbjct: 191 ITTEDRHVYNITTEDWQV 208
>SB_33730| Best HMM Match : DUF1013 (HMM E-Value=6.3)
Length = 195
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 334 RDLLMGLTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARINDKENFEVTTL 513
R+ L GL KD FAT P E + +I++ R+ ++ ++ +NF T+L
Sbjct: 104 RNKLKGLYEKDCCFATLTAPNEFAPRINDAKRYLIDITARRN-PLSYEVHVNQNF-CTSL 161
Query: 514 RID 522
I+
Sbjct: 162 AIN 164
>SB_6678| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-10)
Length = 371
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = -2
Query: 449 PLTFIILTSSAVNISFISSGVAVVAKSRSFGVSPIKRSLTAPPAILISCLYLSKIFFRSI 270
P+ + + VN F + A + + G+ +L +P +LI+CL S + S+
Sbjct: 27 PMYITTIVTCVVNSLFAVT--ATLTNAVILGIIVKDETLHSPANLLIACLAASDLVIGSV 84
Query: 269 TSSVNILLNSGESTLIT 219
T + +GE +T
Sbjct: 85 TQPCYVAYKTGELLGVT 101
>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = -2
Query: 524 ISILKVVTSKFSLSLIRAVIVPCLSPLTFIILTSSAVNISFISSGVAVVAKSRSFGVSPI 345
ISI+ ++T + I V + + ++ + + ++ +NIS I V + R +G +
Sbjct: 213 ISIVTIITIIIIIINISIVTIIITNNISIVTIITTTINISIIIINVMPPSPFRRWGSKAL 272
Query: 344 KRSLTAPP 321
+ PP
Sbjct: 273 QNMTIIPP 280
>SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.5 bits (58), Expect = 9.7
Identities = 35/171 (20%), Positives = 79/171 (46%), Gaps = 2/171 (1%)
Frame = -2
Query: 539 RPSVTI-SILKVVTSKFSLSLIRAVIVPCLSPLTFIILTSSAVNISFISSGVAVVAKSRS 363
+P++ I S L+ +++ + R+ + L+ F ++ +V I +A+ R
Sbjct: 79 QPAILIWSTLEFYVNEWPETYCRSAVAFGLTSSMFGGVSLLSVTSIAIDRFLALQLHLRY 138
Query: 362 FGVSPIKRSLTAPPAI-LISCLYLSKIFFRSITSSVNILLNSGESTLITIGFSRHFKFKS 186
+ +KR++ I +IS L+ +F IT+ NIL NS + I F +F+
Sbjct: 139 QTIVNMKRTVYICVVIWVISFSILAIWYFIGITA-YNILTNSFILACVGIVFFSYFRIYK 197
Query: 185 IFDRNLLRLGSVTLHVPLSWKNCPTPKILLHALNITKKKLQIKVAKLLYIS 33
I ++ +++ + ++ + N + ++NI + K + + L+Y +
Sbjct: 198 ILRKHQIQIHAQEMNFSTNSSNDSASETTERSINIKQYKKSVVNSLLVYFT 248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,679
Number of Sequences: 59808
Number of extensions: 335403
Number of successful extensions: 943
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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