Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0051
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   5e-11
SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)           29   2.8  
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)                  29   2.8  
SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05)         29   2.8  
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             28   8.5  

>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
 Frame = +3

Query: 144 MTSILDQYKQAAQAS-------YRTKPPAEPMISSGYINMQLEDNVPMFTKQKMNLNPSD 302
           M SILDQY+ AA          + T    EP I++G++ ++ ED +P+F +QK+N  P  
Sbjct: 1   MASILDQYELAASRGAVDSLNPFLTPDTVEP-ITTGFVELKTEDEIPIFRRQKINFRPPS 59

Query: 303 LITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLL 482
            +    VS++ + V ++   + R+D+ N      +   K  +    +  +F+DP   HL+
Sbjct: 60  NMVDLVVSNNTVAVGLSTNVIMRIDLANTSEIDSVEVCK--RLDDAIHRIFIDPTARHLI 117

Query: 483 MSFSSKTKDGCPELAYIHQKSSKLKFVSKI 572
           +   S+      E  Y+ + S K K ++K+
Sbjct: 118 VCMKSQ------ESYYLARNSKKPKPMTKM 141


>SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)
          Length = 680

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
 Frame = +3

Query: 153 ILDQYKQAAQASYRTKP-PAEPMISSGYINMQLEDNVPMFTKQKMNLNPSDLITHAAVSS 329
           ++D  KQ  +     K   A   +  G  N+++ D      + K N+   D   H   ++
Sbjct: 555 VIDASKQVREGKDNIKVLDASKQVREGKDNIKVLDASKQVREGKDNIKVLDASKHTRDNN 614

Query: 330 DNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDPLGCHLLMSFSSKTKD 509
           DN+    A+GK    +I   D    +     C   S+ S +F DP  C +L++ +    D
Sbjct: 615 DNIPKVTASGKHLNNEI---DENPGVVTINKC--NSEKSCMF-DPTKCPMLLTKAKSQTD 668


>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
          Length = 510

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 543 SSKLKFVSKIPNYEITEVGWNFENTSNNMT 632
           +  + F +KI  +E T+ G+NF  T +N+T
Sbjct: 197 TKNIPFATKIGKFEPTDTGYNFTQTLSNVT 226


>SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05)
          Length = 236

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 186 SYRTKPPAE-PMISSGYINMQLEDNVPMFTKQKMNLNPSDLITHAAVSSDNLVVAMANGK 362
           S R+KPP +  MI  G+I  + E    M TK+ +N     ++   +V S    VA    +
Sbjct: 86  SQRSKPPPDLDMIEDGFILSESEAREKMITKKIVNRRSKKVVVLPSVLSKEEYVARCREE 145

Query: 363 LFRMDIRNPD 392
              M + + D
Sbjct: 146 ASNMVMGDQD 155


>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 141 KMTSILDQYKQAAQASYRTKPPAEPMI 221
           +M SILD  +Q A+ S   K P+EP I
Sbjct: 84  QMASILDSLRQEAECSLCHKTPSEPKI 110


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 435 SKLSGLFLDPLGCHLLMSFSSKTKDGCPELAYIHQKSSKLKFVSKIPN 578
           S ++G         + M+   KTKD    +  IH  S KLK  S I N
Sbjct: 351 SSVNGFGFKESDLDICMTLDGKTKDDVDPIKVIHDLSKKLKQHSDIRN 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,813,316
Number of Sequences: 59808
Number of extensions: 399614
Number of successful extensions: 821
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)