Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0045
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.032
SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    30   0.91 
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  30   1.2  
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)                       28   4.9  
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)                 28   4.9  
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)           27   6.4  
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      27   8.5  

>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +3

Query: 27  LTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISYI 206
           +T++T L   + G ++  V  +  TA Y+A  + +P++L  G     + +   +QW++Y+
Sbjct: 671 ITILTCLVAQSIGLLIGTVAPSLPTAVYVAPVTGIPVLLFSGFFVNFDTIPNYMQWLTYV 730


>SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 273

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 121 ARSCRWCYFAASYGPLKVCT*FYSGSATF-FRLRNLQSLSDRCY 249
           AR+C  CY   S  PL+    F  G A F   + NL  +++RC+
Sbjct: 143 ARNCSRCYSQTSAHPLRRPIEFILGPALFLIYMNNLPDVNERCH 186


>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 808

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = -1

Query: 176 HTFNGPYDAAK*HHRQERAKSQVSSCSVGVTNTGHDETKSHSTQSSDQCEECDLVPA 6
           H    P  A K    ++R  S  S+C     N G    K+    SSD+CE  DL PA
Sbjct: 728 HLDGMPMFAKKESFSKKRDVSHHSNCVD--ENAGSPSKKTRVESSSDECEVIDLTPA 782


>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
          Length = 1649

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 137 HRQERAKSQVSSCSVGVTNTGHDETKSHSTQSSD 36
           HR+ R K    + S GV  +G  E  SHS  + D
Sbjct: 197 HRRGRTKKLCKTTSKGVDGSGSSEQSSHSPLTPD 230


>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
          Length = 565

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 137 HRQERAKSQVSSCSVGVTNTGHDETKSHSTQSSD 36
           HR+ R K    + S GV  +G  E  SHS  + D
Sbjct: 338 HRRGRTKKLCKTTSKGVDGSGSSEQSSHSPLTPD 371


>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 95  VGVTNTGHDETKSHSTQSSDQCEECD 18
           VGVT+T H    S S  S+  C+ CD
Sbjct: 109 VGVTDTAHVTKASASVTSAKGCKACD 134


>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
          Length = 279

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 97  LSVSQTQDTTKPKVIPHNPVISVRNVTSCPPP 2
           + VSQT+ ++  + +P  P +S +  +S PPP
Sbjct: 81  MRVSQTRSSSSSQSLPPPPSLSSQTSSSSPPP 112


>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 106 VAVLSVSQTQDTTKPKVIPHNPVISVRNVTSCPPP 2
           V  L   + +   KPK+ P +P+I     TS PPP
Sbjct: 367 VKFLEDLKKRQNDKPKIKPISPLIKTNLETSGPPP 401


>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 206 SSAYEIYRVSQIDATERLDYQCTHCLLWIHINRNLDSYLFDH 331
           SS    +R++ +D +ER  Y C  C        NLD +L  H
Sbjct: 428 SSCLNKHRLTHMDTSERNAYVCQTCDKTFSSKSNLDQHLKLH 469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,242
Number of Sequences: 59808
Number of extensions: 343395
Number of successful extensions: 1095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)