Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0042
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_26956| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_13879| Best HMM Match : UIM (HMM E-Value=4.1e-06) 30 1.8
SB_33340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 29 4.2
SB_45029| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_9646| Best HMM Match : MrpF_PhaF (HMM E-Value=9.1) 28 5.6
SB_53325| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_38303| Best HMM Match : Fz (HMM E-Value=9.8e-07) 28 5.6
SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10) 28 5.6
SB_6342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05) 28 7.4
SB_52722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_42579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_29521| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_20337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_16113| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 45 IQSISYINNRNRKLNVETAEKAIMEEVKANKERKQTTRSRGDTP 176
+ +ISYIN RNRK N+ AEKA EE+K +++ R P
Sbjct: 437 LSAISYINERNRKRNIIEAEKAAAEELKTEEKKDDPFTRRKTLP 480
>SB_26956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 57 RCSVWTSLQPGDPLVLER 4
RC + S PGDPLVLER
Sbjct: 11 RCDISNSCSPGDPLVLER 28
>SB_13879| Best HMM Match : UIM (HMM E-Value=4.1e-06)
Length = 290
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 56 LVHQQQEPEAER*NRRESYHGGGQSE*GKKTDDPFTRRHTKPV 184
L QQQE + +R R E G + G+K +P R+HTK +
Sbjct: 173 LSEQQQEEDEKRRRREEEELQRGTHD-GQKIKEPLRRKHTKRI 214
>SB_33340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
CS+ S PGDPLVLER
Sbjct: 6 CSLSNSCSPGDPLVLER 22
>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
C+V S PGDPLVLER
Sbjct: 32 CTVSNSCSPGDPLVLER 48
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 90 VETAEKAIMEEVKANKERKQTTRSRGDTP 176
+ T ++ M E K ERK TRS DTP
Sbjct: 333 IPTTKQTAMTEKKPTTERKHRTRSTPDTP 361
>SB_45029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 63 CTRCSVWTSLQPGDPLVLER 4
C+R + S PGDPLVLER
Sbjct: 15 CSRTVLSNSCSPGDPLVLER 34
>SB_9646| Best HMM Match : MrpF_PhaF (HMM E-Value=9.1)
Length = 126
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 5 RSRTSGSPGCRLVHTEHLVHQQQE 76
RSRTSGSPG + T+ L+H + +
Sbjct: 11 RSRTSGSPGLQEFDTKGLLHTRMD 34
>SB_53325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
C + S PGDPLVLER
Sbjct: 2 CDISNSCSPGDPLVLER 18
>SB_38303| Best HMM Match : Fz (HMM E-Value=9.8e-07)
Length = 528
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 314 ENHEEAKRSRGEHPTSSDTSLYSLHDFEINIDLDLPAAKSVSSQPKQVTTKVK 472
+N+EE+ RSR T S S ++ +L P + + +P + T++K
Sbjct: 349 DNNEESSRSRSNGDTDSTIPKPSAVSHHVSSNLPSPKVQEPTKRPSKQVTELK 401
>SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)
Length = 1292
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/17 (76%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -1
Query: 51 SVWTSL-QPGDPLVLER 4
+VWT L PGDPLVLER
Sbjct: 1167 NVWTVLTSPGDPLVLER 1183
>SB_6342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -1
Query: 108 LSRRFQRSASGSCC*CTRCSVWTSLQPGDPLVLER 4
LSR+ Q S C+ C S PGDPLVLER
Sbjct: 10 LSRKLQYSEHIIKSRCS-CQSSNSCSPGDPLVLER 43
>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
Length = 680
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 63 CTRCSVWTSLQPGDPLVLER 4
C +V S PGDPLVLER
Sbjct: 209 CKTVNVSNSCSPGDPLVLER 228
>SB_52722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
C++ S PGDPLVLER
Sbjct: 9 CALSNSCSPGDPLVLER 25
>SB_42579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 99 RFQRSASGSCC*CTRCSVWTSLQPGDPLVLER 4
+FQ+ G TR S PGDPLVLER
Sbjct: 27 KFQKVTLGKIKQYTRKKRSNSCSPGDPLVLER 58
>SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 499 PRGVQEEARAHLSVAIPPRPSARPPDWEPS 588
P G QE+ + +V+ PRP + PP + S
Sbjct: 161 PSGSQEQLSINANVSSSPRPKSLPPSYNKS 190
>SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
C V S PGDPLVLER
Sbjct: 25 CYVSNSCSPGDPLVLER 41
>SB_29521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1
Query: 57 RCSVWTSLQPGDPLVLER 4
RC S PGDPLVLER
Sbjct: 49 RCKTTASEFPGDPLVLER 66
>SB_20337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
C + S PGDPLVLER
Sbjct: 5 CKLSNSCSPGDPLVLER 21
>SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
C + S PGDPLVLER
Sbjct: 69 CLISNSCSPGDPLVLER 85
>SB_16113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 54 CSVWTSLQPGDPLVLER 4
C+ S PGDPLVLER
Sbjct: 19 CAASNSCSPGDPLVLER 35
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,002,262
Number of Sequences: 59808
Number of extensions: 267225
Number of successful extensions: 2441
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2441
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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