Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0185
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17919| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   5e-07
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035)                33   0.19 
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)               33   0.19 
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)                 31   0.99 
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)                   29   3.0  
SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)                 29   5.3  
SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 28   7.0  

>SB_17919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 KVRQLCVTRRNLTMPPKKPSGA-SXXXXXXXXXXVIEDKTFGLKNKKGAKQQKFIQQVEK 435
           + R+L        MPPKK                +IEDKTFGLKNKKG KQQ F++QV +
Sbjct: 7   RARRLAGKSSQAVMPPKKKQNEPGKKTVEKKKEKIIEDKTFGLKNKKGKKQQTFVKQVTQ 66

Query: 436 Q 438
           Q
Sbjct: 67  Q 67


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 584  SVVCAFFKQGQCAKGDRCKFSH 649
            ++ C FF +G C KGDRC + H
Sbjct: 1348 TIPCRFFAKGNCLKGDRCLYLH 1369


>SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035)
          Length = 289

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 539 KPVQTQKVEKGTDPKSVVCAFFKQGQCAKGDRCKFSHDL-TIERKAEKRSL 688
           K  +T+K +K T P   +C F+ +G C  G  CK SH +  +E + + R L
Sbjct: 146 KNPRTEKEKKPT-PNKNICRFYLKGNCRYGYLCKKSHAVEEVEEEKDDRHL 195


>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
          Length = 267

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 584 SVVCAFFKQGQCAKGDRCKFSHDLT 658
           S  C  F +G C  GD CK+SHD++
Sbjct: 138 SNACRHFLKGNCWHGDNCKYSHDVS 162


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 533 LFKPVQTQKVEKGTDPKSVVCAFFKQGQCAKGDRCKFSHDL 655
           L K  +T    K   P   +C+F+ +G+C +G+ C + HD+
Sbjct: 219 LMKLARTTPYYKRNRPH--ICSFWVKGECKRGEECPYRHDM 257


>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 527 AALFKPVQTQKVEKGTDPKSVVCAFFKQGQCAKGDRCKFSHD 652
           + L K VQ  +       K  VC  F++G+C  G++CKF H+
Sbjct: 89  SVLEKHVQLSEQAPTLKGKKRVCWKFQKGKCRFGEKCKFVHN 130


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 590 VCAFFKQGQCAKGDRCKFSHDL 655
           VC ++ +G+CA G +C+ SH +
Sbjct: 99  VCPYYIKGKCAHGQKCRLSHKI 120


>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
          Length = 508

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 590 VCAFF-KQGQCAKGDRCKFSHDLTIERKAEK 679
           VC F+ K+G C  G++C+F H   I ++ +K
Sbjct: 42  VCRFYAKKGNCRFGEKCRFVHKEIISKEDDK 72


>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
          Length = 650

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 575 DPKSVVCAFFKQGQ-CAKGDRCKFSHD 652
           D  S +C+F  +G+ C +GD C + HD
Sbjct: 61  DNSSKLCSFAARGEECTRGDSCFYGHD 87


>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
          Length = 485

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 542 PVQTQKVEKGTDPKSVVCAFFKQGQCAKGDRCKFSH 649
           P   + + KG+     VC F   G+C  G RC+F H
Sbjct: 178 PTLDEFLRKGSSHTPKVCPFL--GRCTFGPRCRFYH 211


>SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 452 PPLFTCFSTC*MNFCCLAPFLF--FKPNVLSSITFSFFFC 339
           PPL T       +F   A F F  F P V S ITF F+FC
Sbjct: 20  PPLLTSTMLYDGSFMKYAYFYFDEFLPYVKSLITFCFYFC 59


>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 569 GTDPKSVVCAFFKQGQCAKGDRCKFSH 649
           G D  ++ C  +++G C +G +CKF H
Sbjct: 31  GADENNI-CRDYQRGVCNRGGKCKFRH 56


>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 542 PVQTQKVEKGT---DPKSVVCAFFKQ-GQCAKGDRCKFSHD 652
           P++  K  + T   D +  +C  +K+ G C  GD CKF HD
Sbjct: 164 PIRAPKNLRATIRWDYQPDICKDYKETGFCGFGDSCKFLHD 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,323
Number of Sequences: 59808
Number of extensions: 277193
Number of successful extensions: 540
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)