Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0184
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)                29   4.2  
SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     28   9.6  
SB_58884| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-29)                 28   9.6  
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             28   9.6  
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)                      28   9.6  

>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
          Length = 865

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 596 RMERILPKKVEYVHRKLYFEIEKVFLINHYTFSINYFCMP 477
           R  + +P KV  VH++ + + +   + NH+ FS+  F +P
Sbjct: 608 RSSQDIPAKVPKVHKRRHKKGKNEVVHNHHKFSVTQFSIP 647


>SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/86 (24%), Positives = 40/86 (46%)
 Frame = +3

Query: 189 LTSSILFPKTLTKLTEKQLWTKHLGISYLNYLLRIITLLKILYRSA*NHAGDLWLRQQCL 368
           + S +LF  TL  L  K L  K  G+ Y         ++++  R   +  GDL LR  C+
Sbjct: 306 MASIVLFISTLNPLALKFLIQK--GVHY--------KMMRVAQRLLGDKRGDLALRYYCI 355

Query: 369 LYYLAISLTPSH*INVNNYSHTLKKV 446
           L+   + ++P   +  +  + T+ ++
Sbjct: 356 LFLAKVRVSPGSELQDDGSAQTIDRI 381


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 131 EELRTKYKDVLSKAFATNNIDLIDSFSKNTDETDRKAAMDQAFRDKLLELLTED 292
           E+L    K+V  +AF    I   +   KN ++ D       A RD+L++L TE+
Sbjct: 579 EKLNGYNKEV--EAFRKKEIMAAEEMKKNVEKLDELGTALDAARDELMDLNTEE 630


>SB_58884| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-29)
          Length = 640

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 270 YLNYLLRIITLLKILYRSA*-NHAGDLWLRQQCLLYYLAISLTPSH*INVNNYSHTLKKV 446
           Y N   R+ T L   Y +    + G  W R  C L Y   S T  H  ++ N++  +++ 
Sbjct: 152 YENETNRVDTRLHCSYLNMDITNPGQFWQRDGCTLSYTNWSHTVCHCYHLTNFALLMEEY 211

Query: 447 SVYGRKNYFSWHAKII 494
            V  +K+   +H +++
Sbjct: 212 QVIEKKD--DYHQRLL 225


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +3

Query: 174 LQRTTLTSSILFPKTLTKLTEKQLWTKHLGISYLNYLLRIITLLKILYRSA*NHAGDLWL 353
           L  T  TS    P T T      L  K L     +YLL+ +  L +  R        LWL
Sbjct: 132 LLSTGTTSPSPSPSTSTTNVPAVLPAKQLSTELSSYLLQEVRALVLQTRGGAAIMSKLWL 191

Query: 354 RQQCLLYYLAISLT 395
               LL  +A +LT
Sbjct: 192 ASVILLCCIAAALT 205


>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
          Length = 225

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 318 RSA*NHAGDLWLRQQC 365
           RSA  H GDLW +QQC
Sbjct: 147 RSAFAHYGDLWCQQQC 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,914,894
Number of Sequences: 59808
Number of extensions: 446084
Number of successful extensions: 1380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)