Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0179
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               29   3.8  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               29   3.8  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   5.1  
SB_30674| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)               28   8.8  
SB_18155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_13978| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)               28   8.8  
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)           28   8.8  

>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +3

Query: 261  SSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAK 440
            S +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ +
Sbjct: 972  SPLRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQER 1031

Query: 441  LRTQNRAAQSE 473
            +    R  Q +
Sbjct: 1032 IYRHARVCQGD 1042


>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 202 YDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDSLLNLNFII 29
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 49  YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 106


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 202 YDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDSLLNLNFII 29
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 609 YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 666


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 224 YIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEI 349
           Y     S  +I    + VGV ++   G  ++D  QHY K+E+
Sbjct: 519 YARSVTSTLKISSAETHVGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_30674| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)
          Length = 413

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +2

Query: 74  LSIIKFLELALTCSCVALHYHSYNADADIGMLVTGTFVGYLIIFAGAAAGY---IMQTPS 244
           + I+ F+ +++       +Y  ++A  D G+  +     + +I      GY   +  TP 
Sbjct: 311 MMILFFILISMVMFSGCTYYAEFDAQPD-GVFSSIPDTAWFVIVTLTNVGYGDAVPVTPI 369

Query: 245 HKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKDKN 361
            K +    +LVGV        +I  RF+ +  +E   KN
Sbjct: 370 GKLLGTMCALVGVLAIALPSPVIATRFKQFYDAEKIRKN 408


>SB_18155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +3

Query: 42  KFRSESWPSAGCLSSSFWSWHLRVRASLSITTVTMQMRILACSSPVPLSGTSSYSLVRPR 221
           + RS +      + SS    H RVR+S ++    ++       + V  S T  ++ VR  
Sbjct: 352 RVRSSATLGHARVRSSATLGHARVRSSATLGHARVRSSATLGHARVRSSATLGHARVRSS 411

Query: 222 AT*CRLLHTNGST---SSIRWSVLPCSSLAVPLLL 317
           AT       + +T   + +R S  PCSSL + L+L
Sbjct: 412 ATLGHARVRSSATLGHARVRSSARPCSSLQLVLVL 446


>SB_13978| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)
          Length = 413

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +2

Query: 74  LSIIKFLELALTCSCVALHYHSYNADADIGMLVTGTFVGYLIIFAGAAAGY---IMQTPS 244
           + I+ F+ +++       +Y  ++A  D G+  +     + +I      GY   +  TP 
Sbjct: 311 MMILFFILISMVMFSGCTYYAEFDAQPD-GVFSSIPDTAWFVIVTLTNVGYGDAVPVTPI 369

Query: 245 HKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEIKDKN 361
            K +    +LVGV        +I  RF+ +  +E   KN
Sbjct: 370 GKLLGTMCALVGVLAIALPSPVIATRFKQFYDAEKIRKN 408


>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
          Length = 317

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +2

Query: 179 TFVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EI 349
           TF  +L+   G       +TP  +   IFY+LVG+ L + +   + + + HY K     I
Sbjct: 109 TFATHLLTTIGYG-NLTPKTPGGQLFTIFYALVGIPLTLLTLKSMGNHYNHYIKKLIILI 167

Query: 350 KDKNLAKASLAIINGAILLVD 412
           + + L +  +  + G + L D
Sbjct: 168 ETRCLKRTEVKGLEGKVCLGD 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,244,903
Number of Sequences: 59808
Number of extensions: 411765
Number of successful extensions: 1004
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)