Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0173
         (376 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   3e-05
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        31   0.30 
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.53 
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.70 
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   29   0.93 
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   1.2  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.1  
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          28   2.8  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   27   3.7  
SB_26402| Best HMM Match : K-box (HMM E-Value=1)                       27   5.0  
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)                 27   5.0  
SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       27   6.5  
SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 26   8.7  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 26/70 (37%), Positives = 31/70 (44%)
 Frame = -2

Query: 375 PAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPV 196
           PA H   R R+ SR  R    +R P   R +R P P   S   R RS +PR R+  SR  
Sbjct: 216 PAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSP 275

Query: 195 WSRRSPHHFH 166
             RR     H
Sbjct: 276 THRRHRSRSH 285


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 363 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRN-KPSR 202
           P GR ++ SR     T  R+  T+ N R P P   S   R  S +PR R+  PSR
Sbjct: 534 PVGRTKSPSRSY---TSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -2

Query: 375 PAGHPSGRCRAVS--RDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 202
           P G      R+ +  R  RT+   R P   R  R P P   S   R RS +P  ++ P R
Sbjct: 534 PVGRTKSPSRSYTSPRQRRTSPNNRSPPPRR--RSPSPRRPSPSPRRRSTSPSRKSPPPR 591

Query: 201 PVWSRRSPHH 172
            V   +   H
Sbjct: 592 RVHRHQDVVH 601


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -2

Query: 339 SRDIRTTTEARRPGTARNTRRPKPTELSVCCR----ERSETPRHRNKPSRPVWSRRSPHH 172
           +RD R T   R P  ++  R P+P++     R    +R   P  + +  RP   +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250


>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 141 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 317
           ++ +S+Y      ++++ + ++++Y  +      P S  +A   SD   FSLC+  GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 370 RAPL-RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 254
           R PL R  +SR   H+DH     PR S  HS    D  ER
Sbjct: 200 RTPLKRRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -2

Query: 345 AVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPH 175
           A+   +  T    RP + R  R P     S     R +T      PSRP  + R PH
Sbjct: 4   ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 181 TPSRPNR-SRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAP 354
           TPS P+  S    P T    + P+  +      TPS      APG  G P  P+  SAP
Sbjct: 466 TPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP 524


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 367 APLRAVQSREQGHQDHHRGPAPRHSEKH 284
           AP++ +  R +G + HHR     HS+KH
Sbjct: 759 APMQHLGDRREGKRRHHRRHHHSHSQKH 786


>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 339 SRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 178
           +RD R T   R P  ++  R P+P++     ++R   P  + +  RP   +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199


>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 286 VSRCAWAPGLCGGPDVPAHGS 348
           ++R  W+  LCGGPD+   GS
Sbjct: 108 ITRSWWSSRLCGGPDINDDGS 128


>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 322 HHRGPAPRHSEKHSASEADRAER 254
           H  GP+ RHS  H  +E++ A+R
Sbjct: 123 HKEGPSSRHSNVHELNESELAKR 145


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 211 FIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPG-LCGGPDVPAH-GSAPPGGVPGG 375
           ++P  G    +P  N  L     P     A  PG   G P    + G+ PPGG PGG
Sbjct: 209 YVPQEGG--GIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAGGYPGAPPPGGYPGG 263


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 375  PAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETP 226
            P    S RC+  ++ ++     ++PG+A    +PK  + S   R+RS +P
Sbjct: 1887 PGFSQSRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935


>SB_26402| Best HMM Match : K-box (HMM E-Value=1)
          Length = 166

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/73 (20%), Positives = 33/73 (45%)
 Frame = +3

Query: 99  RLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASD 278
           +L +   ++QQ++ S   +       VDS++ +  EK    +  +     SK+  L+++ 
Sbjct: 70  KLGETEYILQQMDSSVKQTAAIKEKDVDSLQQQLAEKDRRIEELNSKLESSKKDVLNSNQ 129

Query: 279 AECFSLCLGAGPL 317
            +C       GP+
Sbjct: 130 EKCLEKFKANGPV 142


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 319 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 215
           H  P+P HS+          E  LP      PSPE
Sbjct: 741 HSQPSPEHSQPSPEHSLPSQEHSLPSPEHSQPSPE 775


>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
          Length = 390

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 357 GRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPR 223
           G+  A +  +  T  ARRP      RRP PT  +   R  + TPR
Sbjct: 11  GQNNATTTGVVPTPRARRPVPTPRARRPNPTTKA---RRPAPTPR 52


>SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 286 VSRCAWAPGLCGGPDVPAHGSAPPGGVP 369
           V RC    GL GGP+ PAH     G +P
Sbjct: 45  VERCCRFEGLPGGPEDPAHVVVYCGTLP 72


>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 331 HQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 167
           H  HH     RH  KH+A  A R   +      D+P+ +    T  +S +S  FP
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRVFSI------DSPNEDSQGKTANIS-DSASFP 214


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 348 RAVSRDIRTTTEARRPGTARNTRR--PKPTELSVCCRERSETPRHRNKPSRPV 196
           R   R  +  T+   P       R  P+PT+     R+R  T R   KP++P+
Sbjct: 257 RPTERPTKKPTKPLLPEVEPEEERATPRPTKAKPTTRKRMPTERPTKKPTKPL 309


>SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 372 AGHPSGRCRAVSRDIRTTTEARRPGTARN 286
           +G+P+GR R+V+R IR  T+    G   N
Sbjct: 601 SGYPAGRPRSVARAIRKKTQQTGVGIVGN 629


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = -1

Query: 364 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 218
           P R       G  D H GP  RH   H        +RL P   RD   P
Sbjct: 134 PDRHTPPDRNGPPDRH-GPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRP 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,632,193
Number of Sequences: 59808
Number of extensions: 253139
Number of successful extensions: 870
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)