Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0165
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)        31   1.1  
SB_50832| Best HMM Match : Homeobox (HMM E-Value=8.7e-23)              30   1.9  
SB_43675| Best HMM Match : K_tetra (HMM E-Value=0)                     29   2.5  
SB_59315| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_56362| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                29   3.3  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_31510| Best HMM Match : RVT_1 (HMM E-Value=0.0055)                  29   3.3  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22)                   29   3.3  
SB_47554| Best HMM Match : Fip1 (HMM E-Value=4.4)                      29   3.3  
SB_31343| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                29   3.3  
SB_26433| Best HMM Match : MAT1 (HMM E-Value=1.2)                      29   3.3  
SB_10391| Best HMM Match : Fip1 (HMM E-Value=4.4)                      29   3.3  
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)             29   4.4  
SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)                  28   7.6  
SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
          Length = 847

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +3

Query: 165 DPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMCEI 344
           D  +++P R+Q++   R ++N  +P D+ PS+ +    L     +       D    C +
Sbjct: 606 DSSAKKPRRRQSKNIQRRISNTKAPPDSCPSLDFIGARLKSGELTLCSQPPDDC---CHV 662

Query: 345 SHPRWDLGPRSDRS 386
            + +W  GP  +R+
Sbjct: 663 EYRKW--GPSPERT 674


>SB_50832| Best HMM Match : Homeobox (HMM E-Value=8.7e-23)
          Length = 285

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 366 GPRSDRSPYPHSARFAVGPSLCRFGLCDCVPYI 464
           GP   R P  H + +  GP + R  +C   PY+
Sbjct: 94  GPHMSRVPICHGSLYVTGPYMSRVPICHGSPYV 126


>SB_43675| Best HMM Match : K_tetra (HMM E-Value=0)
          Length = 794

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 135 HPQPQLRRGLDPVSERPS--RKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSP 302
           H  P +  G++  S R +  R+  R         + PR ++P+   S E LH   SSP
Sbjct: 569 HVAPTMNGGMNEESIRMNNFRRARRARSSLYAGGVVPRMSLPARTRSNEDLHAGKSSP 626


>SB_59315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +3

Query: 111 SRASHYAVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSV-VYSRESLHP 287
           SR     VH   +  R L P   R        + RT  + + PRD+     +  R+S   
Sbjct: 101 SRNDRDLVHRDSRTDRDLIPRDSRTDWDLVPRDSRTDWDLV-PRDSRTDRDLVPRDSRTD 159

Query: 288 NSSSPVRSKRSDANLMCEISHPRWDLGP---RSDRSPYPHSAR 407
               P R  R+D +L+   S   WDL P   R+DR   P  +R
Sbjct: 160 RDLVP-RDSRTDWDLVPRDSRTDWDLVPCDSRTDRDLVPRDSR 201



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 27/95 (28%), Positives = 39/95 (41%)
 Frame = +3

Query: 108 LSRASHYAVHPQPQLRRGLDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHP 287
           LSR     V    +  R L P   R  R     + RT  + + PRD+       R+ +H 
Sbjct: 56  LSRTDRDLVPRDSRTDRDLVPRDSRTDRDLLNRDSRTDRDLL-PRDSRND----RDLVH- 109

Query: 288 NSSSPVRSKRSDANLMCEISHPRWDLGPRSDRSPY 392
                 R  R+D +L+   S   WDL PR  R+ +
Sbjct: 110 ------RDSRTDRDLIPRDSRTDWDLVPRDSRTDW 138


>SB_56362| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 468

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 LDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLH 284
           L+  +E PSRK+ R   R + N +  R+A   +V  R+ LH
Sbjct: 355 LENTNEEPSRKRLRNVERKLRNDVELREAYEKIV--RDQLH 393


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 207 RCVLACGTGARSRDPAHDVAAAAGELRNAT 118
           RC L+CG G +SR+ + D  +  GE  N T
Sbjct: 383 RCSLSCGGGTQSRNRSCDSPSPVGEGLNCT 412


>SB_31510| Best HMM Match : RVT_1 (HMM E-Value=0.0055)
          Length = 333

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 LDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLH 284
           L+  +E PSRK+ R   R + N +  R+A   +V  R+ LH
Sbjct: 3   LENTNEEPSRKRLRNVERKLRNDVELREAYEKIV--RDQLH 41


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -2

Query: 216 CAVRCVLACGTGARSRDPAHDVAAAAGELRNATHATALCLY*CHSGGI 73
           C   C + C  G    DP  +        R AT   A C+  C +GG+
Sbjct: 434 CPTICKVPCENGGTCIDPVSNTCQCPPNWRGATCKQAECVPECLNGGV 481


>SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22)
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 LDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLH 284
           L+  +E PSRK+ R   R + N +  R+A   +V  R+ LH
Sbjct: 168 LENTNEEPSRKRLRNVERKLRNDVELREAYEKIV--RDQLH 206


>SB_47554| Best HMM Match : Fip1 (HMM E-Value=4.4)
          Length = 238

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 LDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLH 284
           L+  +E PSRK+ R   R + N +  R+A   +V  R+ LH
Sbjct: 167 LENTNEEPSRKRLRNVERKLRNDVELREAYEKIV--RDQLH 205


>SB_31343| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 449

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 LDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLH 284
           L+  +E PSRK+ R   R + N +  R+A   +V  R+ LH
Sbjct: 387 LENTNEEPSRKRLRNVERKLRNDVELREAYEKIV--RDQLH 425


>SB_26433| Best HMM Match : MAT1 (HMM E-Value=1.2)
          Length = 394

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 LDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLH 284
           L+  +E PSRK+ R   R + N +  R+A   +V  R+ LH
Sbjct: 168 LENTNEEPSRKRLRNVERKLRNDVELREAYEKIV--RDQLH 206


>SB_10391| Best HMM Match : Fip1 (HMM E-Value=4.4)
          Length = 239

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 LDPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLH 284
           L+  +E PSRK+ R   R + N +  R+A   +V  R+ LH
Sbjct: 168 LENTNEEPSRKRLRNVERKLRNDVELREAYEKIV--RDQLH 206


>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
          Length = 205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 201 VLACGTGARS-RDPAHDVAAAAGELRNATHATALCLY*CHSGGILNCYL 58
           V  C +  RS R+ +  +A+AAGE  +    +A     C  GGIL+C L
Sbjct: 20  VAKCPSDVRSHRNSSRLMASAAGEQHSCEFGSAKYYALCGFGGILSCGL 68


>SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 165  DPVSERPSRKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRSDAN 329
            DP S   SR     +P  +   +S     P+V+Y   S H N +S +  + S  N
Sbjct: 962  DPASIDKSRSLHTIDPFIIYEELSTHTKDPNVIYDELSTHNNDASVLYDELSTHN 1016


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 243 DAMPSVVYSRESLHPNSSSPVRSKRSDANLMCEISHPRWD 362
           DA+  +  +R+S H  S   + +++SD        H RWD
Sbjct: 227 DAVRDIRSTRDSRHTGSLEKLANEKSDYGKQSRSEHGRWD 266


>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 198 LACGTGARSRDPAHDVAAAAGELRNATHATALCLY*CHSG--GILNCY-LVLKVGHFSKL 28
           L   TG+   + + +V  A     N T+ T   +Y CH+G   + NC  + LKV HF   
Sbjct: 686 LVTPTGSVYINASGEVLRARDYYTNGTNVTIGPIYVCHAGRHKVSNCSGVFLKVEHFIIF 745

Query: 27  P 25
           P
Sbjct: 746 P 746


>SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 195 QARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMCEISH 350
           +    P T T ++ P  A   V+    S++  SSSP+RS+    +L  E  H
Sbjct: 321 ECTNNPNTPTIHVRPMSAAGEVI----SIYSRSSSPIRSQSVITSLQKESPH 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,432,061
Number of Sequences: 59808
Number of extensions: 456817
Number of successful extensions: 1194
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)