Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0148
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)             169   2e-42
SB_34113| Best HMM Match : PSD5 (HMM E-Value=3.3)                      31   0.64 
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    30   1.9  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   1.9  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   30   1.9  
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)               29   3.4  
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             29   4.5  
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)           29   4.5  
SB_11431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   5.9  
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             28   7.9  
SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     28   7.9  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    28   7.9  

>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score =  169 bits (411), Expect = 2e-42
 Identities = 81/132 (61%), Positives = 100/132 (75%)
 Frame = +1

Query: 268 MRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTE 447
           MRGIKGLV ETS+LD +E               LPKA GG+EPLPEG+FWLL+TG+IPT+
Sbjct: 1   MRGIKGLVTETSLLDPEE--------------LLPKADGGKEPLPEGIFWLLMTGEIPTK 46

Query: 448 AQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHK 627
            Q   LSKEWAA+A+LP HVV MLNN P  LHPMSQFSAA+TA+N+ESKF +AY++GV+K
Sbjct: 47  QQVDNLSKEWAAKADLPQHVVQMLNNFPDTLHPMSQFSAAITAMNTESKFVQAYNKGVNK 106

Query: 628 SKYWEYVYEDTM 663
            +YW Y ++D M
Sbjct: 107 KEYWMYCFDDAM 118


>SB_34113| Best HMM Match : PSD5 (HMM E-Value=3.3)
          Length = 851

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
 Frame = +1

Query: 97  ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRG 276
           AC    V  RG   +QTNL+ + +   P+E +     RK+  +++    T D       G
Sbjct: 4   ACALDLVHDRGRRFDQTNLRPMAEVSFPRELQPSEIQRKEASASRESVQTSDSESPAQEG 63

Query: 277 IKGLVWETSVLDADEGIRFRGLSIPECQQQ----LPKAKGGEEPLPEGLFWLLVTGDIPT 444
            + +    S   A EG R    S  +   Q      +    E P  EG    + T D  +
Sbjct: 64  RQSIQTSDSESPAQEGRRSVHSSDSDSPAQEGRLSVQTSDSESPAQEGRL-SVQTSDSES 122

Query: 445 EAQAKALSKEWAARAELPA 501
            AQ   LS +  + +E PA
Sbjct: 123 PAQEGRLSVQ-TSDSESPA 140


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 124 RGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKV 234
           RGL  E+ +L+ +LQE   K   + +E ++ HG  K+
Sbjct: 544 RGLKVEKEDLERVLQEAGEKVASQQKELKEAHGQRKL 580


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 347 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 249
           M  P + + ++A+ TE++ T+PL+P  P  ++S
Sbjct: 366 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 398


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 169  EKIPKEQEKIREFRKKHGSTKVGEVTVD 252
            E+I   QEKI+E RK +GS K    T+D
Sbjct: 924  ERIRLLQEKIKEMRKLYGSLKAEVATID 951


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 298 TSVLDADEGIRFRGLSIPECQQQLPKAKGG 387
           +S+ DA   IRF  LS+PE + + PK+  G
Sbjct: 872 SSIFDALRNIRFPRLSLPELEGRFPKSSPG 901


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 347 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIIS 249
           M  P + + ++A+ TE++ T+PL+P  P  ++S
Sbjct: 118 MPAPTESVVTTATPTEIAVTKPLLPPKPSGLVS 150


>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +1

Query: 139 EQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDAD 318
           E   L  I  + +  E    RE  K     + G     ++   +   +GL W+ S  D D
Sbjct: 131 EHCRLMGIAVQYLINEGHNFRESDKICMKYEAGPCLGPVLDDTVLRARGLPWQAS--DQD 188

Query: 319 EGIRFRGLSIPECQQQL 369
               FRGL+IP C  ++
Sbjct: 189 VANFFRGLNIPSCVSRM 205


>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
          Length = 430

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 244 TVDMMYGGMRG-IKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 405
           TVD++Y  +RG    LV   + LD  E ++F  L   +CQ   P A+  +  LP+
Sbjct: 254 TVDLLYLFVRGDFTPLVSCDACLDL-EVLQFMNLDFIQCQPTAPDAQDSKHTLPD 307


>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 31   RSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFR 210
            +S  ++  +  + SS L+ + K   T T  +  L+ E T LK  L+     EQ+      
Sbjct: 801  KSEMMEKKMQDMASSSLM-MNKVITTTTDSINDLNEEMTELKIQLETGFETEQDLRTSLN 859

Query: 211  KKHGSTKVGE 240
            +  G  K+GE
Sbjct: 860  QAEGRIKLGE 869


>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
          Length = 976

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 154 KSILQEKIPKEQEKIREFRKKHGSTK 231
           K +++EK P E++K  E +KKH S K
Sbjct: 109 KKVIKEKDPSEKKKDGESKKKHRSEK 134


>SB_11431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 97  ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 243
           AC    V  RG   +QTNL+ + +   P+E + I E ++K   T  G +
Sbjct: 4   ACALDLVHDRGRRFDQTNLRPMAEVSFPRELQPI-EIQRKEACTGPGMI 51


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 55  LFRITSSRLVELQKACPTA-TVLLRGLSAEQTNLKSILQEKIPKEQEKIR 201
           L +    R+ EL+ A   A + +  G+ A++ + K++  EKI KE+EK++
Sbjct: 297 LIQTLQKRIKELESAGTQAGSKIDTGMGAKRKDSKAVDPEKIAKEKEKLQ 346


>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 264

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -3

Query: 173 FSWRILFKFVC----SALRPRSRTVAVGHAFCNSTSLEDVIL 60
           F W +L  FV     S + PRSR    G   C STS+  ++L
Sbjct: 135 FDWMLLTCFVIDKLESMITPRSRAAWAGLMKCPSTSISGIML 176


>SB_39652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 25  SLRSAALKMALFRITSSRLVELQKACPTATVLLR 126
           SLR A+ ++   RI S  +V L+KA     +LLR
Sbjct: 33  SLRKASERVVNLRIASESMVNLRKASERMVILLR 66


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 344 DRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEPCF 213
           D+P   IPS  SST  S        MPP  +ST T P    P F
Sbjct: 789 DQPIPAIPSLMSSTLTSSISTTSTGMPPASLSTPT-PFFTHPGF 831


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 349 PECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAAR 486
           P C+  LPK +G    +P G  W+LV G+   +A  K+    W ++
Sbjct: 568 PACRM-LPK-EGEPISIPNGTPWILVEGNSAIQANPKSKINCWISK 611


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,611,180
Number of Sequences: 59808
Number of extensions: 415958
Number of successful extensions: 1385
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)