Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0139
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             52   4e-07
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             46   2e-05
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                  31   0.98 
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     27   9.1  

>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = +2

Query: 488 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIAL 616
           +RRLFLVEDL DS+K  V+L+ L+Y+   F+GITL  +G+I L
Sbjct: 33  VRRLFLVEDLADSIKLLVVLYILSYLAQWFSGITLTFIGFIGL 75


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 35/67 (52%)
 Frame = +2

Query: 332 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 511
           +R+   V+ A+QK+   +PFK LL+ E+ +                      LRRLFLVE
Sbjct: 422 YRVGMTVMGAIQKSGTENPFKTLLDKEIEIPKEKAVEMAESLAEHINCLTKSLRRLFLVE 481

Query: 512 DLVDSLK 532
           D+VDS+K
Sbjct: 482 DIVDSIK 488


>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 571 RPHVREAPQQHAELQRVHQVLHQEQS 494
           RPH+R A QQ + +Q+ H  LH++ +
Sbjct: 169 RPHIRLASQQWSAVQQFHDYLHEDDN 194


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 598 DDERDPVEARPHVREAPQQHAELQRVHQVLHQEQS 494
           DD  +  E R   R   ++H ++  VH  LH EQS
Sbjct: 151 DDGWEGKEVRKEARRQEEEHRKVTVVHSKLHPEQS 185


>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 568 PHVREAPQQHAELQRVHQVLHQEQSAQ 488
           PHVR+  Q    + R HQ LHQ + A+
Sbjct: 560 PHVRQGHQHPQRVPRRHQDLHQVRCAR 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,361
Number of Sequences: 59808
Number of extensions: 190715
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)