Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0126
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             31   1.2  
SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)                         28   8.2  

>SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 559 LPERLRRRPNNSRAIASRMNLLPDRNR 639
           +P+R R  P+NSR I     ++PDR+R
Sbjct: 37  IPDRSRILPDNSRIIPDHSRIIPDRSR 63



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 559 LPERLRRRPNNSRAIASRMNLLPDRNR 639
           LP+  R  P++SR I  R  +LPD +R
Sbjct: 44  LPDNSRIIPDHSRIIPDRSRILPDHSR 70



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 559 LPERLRRRPNNSRAIASRMNLLPDRNR 639
           +P+R R  P++SR I  R  +LPD ++
Sbjct: 58  IPDRSRILPDHSRIIPDRSRILPDHSQ 84


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 49  TVAFVKTFLKPEHLYGISSEIVRDRPSFLHFQHLHLRCLSLQTLYHYPQTMFAVSLF 219
           T+ F      P HLY IS   +   P F +   +HL  +S +T++  P   + V L+
Sbjct: 44  TIHFSPLLTYPVHLYPISYRTIHFSPLFTYL--IHLYPISYRTIHFSPLLTYPVHLY 98


>SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 452 NCR*LKDYWWPG 487
           NC  ++DYWWPG
Sbjct: 211 NCSDIRDYWWPG 222


>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
          Length = 459

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 405 YKVLHENLREVPRGPSGLVEIYENYSDDDVTAYTDGLSNLVHET-DLNDDDS 253
           +K+     R +P  P  +    ++ SDDD  ++T G  N   +T D NDDD+
Sbjct: 38  HKLRDTRQRRLPPRPQPIKPASKD-SDDDTGSHTSGHENTEDDTDDGNDDDN 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,030,596
Number of Sequences: 59808
Number of extensions: 453118
Number of successful extensions: 1662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)