Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120110.Seq
(826 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 7e-37
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 85 5e-17
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 33 0.21
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 1.1
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 29 3.5
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 29 6.1
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 29 6.1
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05) 29 6.1
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 29 6.1
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 29 6.1
SB_51217| Best HMM Match : TUDOR (HMM E-Value=0) 28 8.0
SB_3381| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 151 bits (366), Expect = 7e-37
Identities = 68/87 (78%), Positives = 76/87 (87%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G + ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIV
Sbjct: 110 GTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIV 169
Query: 681 AGGGRIDKPILKAGRAYHKYKVKRNCW 761
AGGGRIDKP+LKAGRAYHKYK KRNCW
Sbjct: 170 AGGGRIDKPMLKAGRAYHKYKAKRNCW 196
Score = 98.3 bits (234), Expect = 7e-21
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = +2
Query: 260 LRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
LR DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 29 LRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 81
Score = 61.3 bits (142), Expect = 9e-10
Identities = 23/38 (60%), Positives = 32/38 (84%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
+YTGQF+YCGKKA L++GN +PVG MPEGT+ + ++ K
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEK 119
Score = 52.0 bits (119), Expect = 6e-07
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 177 MGRVIRAQRKGAGSVFVSHTKKRKGALN 260
MGRVIR QRKGAGS+F SHTK RKGA N
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAAN 28
Score = 51.6 bits (118), Expect = 8e-07
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 767 VRGVAMNPVEHPHGGGNHQH 826
VRGVAMNPVEHPHGGGNHQH
Sbjct: 199 VRGVAMNPVEHPHGGGNHQH 218
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 85.4 bits (202), Expect = 5e-17
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 668
G + ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +
Sbjct: 68 GTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123
Score = 73.7 bits (173), Expect = 2e-13
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +2
Query: 302 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 418
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39
Score = 61.3 bits (142), Expect = 9e-10
Identities = 23/38 (60%), Positives = 32/38 (84%)
Frame = +1
Query: 418 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTMCAILKRK 531
+YTGQF+YCGKKA L++GN +PVG MPEGT+ + ++ K
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEK 77
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 33.5 bits (73), Expect = 0.21
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = +3
Query: 501 GYHVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 680
G V N+E G +LARA+G A +I + V+LPS +K + S VG V
Sbjct: 126 GTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVGRV 183
Query: 681 AGGGRIDKPILKAGR 725
+ R ++ I KAGR
Sbjct: 184 SNIERKNRVIGKAGR 198
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 688 PPATIPTMPLLLDGRTFLAPDGSFT 614
P AT + L+LD TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = -1
Query: 646 RTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTWYPQA*LQQASHFQ 467
+ LA D +R+ LCP + +R P SP S L P + ++ S +
Sbjct: 310 QNLLADDKGMVGLRVEGKLCP----RNERRNSRTPNSPRSSDSLQVNDPASRAKRPSIYD 365
Query: 466 LQELLSFHNKQIGLCRAFGSNEEL 395
LQ++LS NK+ + SN+E+
Sbjct: 366 LQQILSELNKE-ATAKGNLSNKEM 388
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 549 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 677
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 752 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 627
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 752 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 627
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181
>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
Length = 249
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 752 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 627
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 752 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 627
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 86 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 752 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 627
T DL+L P N VNTST+S +DH +V NL SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 652
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 814 TTTVRMLYRVHGNTTYI-CQQLRLTLYLWYALPAFKI 707
TTTV++LY +GNT Y+ +LR L ALP I
Sbjct: 135 TTTVKVLYVDYGNTEYLPSTRLRHLLEKHAALPKMAI 171
>SB_3381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -3
Query: 632 SRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHMVPSGIAPTGITFPTSRVA 453
SRR L + + S VS HS + TC+ T + L K A V SG+ + + VA
Sbjct: 59 SRRTLSTHSQSSHTVSRHSQRRTINTCKGTPTSLTLNKYALRVNSGVLSLTFSKSITTVA 118
Query: 452 F 450
F
Sbjct: 119 F 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,056,471
Number of Sequences: 59808
Number of extensions: 587449
Number of successful extensions: 1440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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