Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120104.Seq
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 4.2
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05) 28 7.3
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.3
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_11940| Best HMM Match : TspO_MBR (HMM E-Value=6.8) 28 9.6
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_39148| Best HMM Match : OEP (HMM E-Value=0.33) 28 9.6
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = -3
Query: 502 KFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTNSILLVKLV 329
+F + +NS LT++ L + + T + S +G ++VS+ SVTTNS++LV ++
Sbjct: 746 RFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTNSLILVVII 804
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 553 LRGAKRLGYPHVAVIFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVS 374
++G RLGY V+ ++T+ + R ++T+ L T HN +M + G L +
Sbjct: 932 VKGCSRLGYLDVSWNQLQYTREELGMMRKHLITLTYLDTRHNPWQKTETLRMRALGRLKN 991
Query: 373 L 371
L
Sbjct: 992 L 992
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 22 KCIKMKRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 198
K + KR K++ T E+V +K +K + L + +LK L E Y+ LK K L KY+
Sbjct: 68 KSAEAKRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +1
Query: 4 KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLA 183
+A + +KC ++ V+ K V+ I DEK+ + + E L +L+S + +++
Sbjct: 979 QAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEIL 1035
Query: 184 LSKYMAMLSTLEMTQPLLEIFRN 252
S+ +M L Q E RN
Sbjct: 1036 RSEQESMHQVLTERQQECETLRN 1058
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +1
Query: 4 KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLA 183
+A + +KC ++ V+ K V+ I DEK+ + + E L +L+S + +++
Sbjct: 927 QAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEIL 983
Query: 184 LSKYMAMLSTLEMTQPLLEIFRN 252
S+ +M L Q E RN
Sbjct: 984 RSEQESMHQVLTERQQECETLRN 1006
>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
Length = 435
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 184 LSKYMAMLSTLEMTQPLLEIFRNKQTLGKLPPWCLAH*LLYTIDSI 321
+S ML+ L T PL+ + ++TLG++P +C L T+ +
Sbjct: 87 ISASCLMLTLLSYTVPLISMNATQKTLGEVPLFCYWSALFETLGCV 132
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 363 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 470
+E D SI P + N G L+C VDR SI ++ S
Sbjct: 37 SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 526 DSQDVWRL*AQKHDAQHDYESNKQPDYDMDLSDFSI 633
D D W A+K D DY +NK D D +LSD +
Sbjct: 977 DDPDFWEKWAKKADLDVDYLNNK--DGDFELSDIEM 1010
>SB_11940| Best HMM Match : TspO_MBR (HMM E-Value=6.8)
Length = 229
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 574 HDYESNKQPDY-DMDLSDFSITAVEATQYLTLLLIVEHAYLHYYI 705
+DY++ PD D DLS+ + + T LT++L L YYI
Sbjct: 143 YDYKALVPPDVLDHDLSNRHLNVMSGTVALTVVLFSGSVGLFYYI 187
>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 609 IVIWLFI*LVIMLRVVFLRLEAPNVLAIRTLQL 511
IV+WL +I LR++ LRL A ++ +R + L
Sbjct: 794 IVLWLIALQLIALRLIVLRLIALRLITLRLIAL 826
>SB_39148| Best HMM Match : OEP (HMM E-Value=0.33)
Length = 208
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 31 KMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 207
K+ + K + ++ + K+ K Y+LA+ K + + K KLA +KY
Sbjct: 53 KLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLVKATYKLANAKYKLAKAKYKPAK 112
Query: 208 STLEMTQPLLEIFRNKQTLGK 270
+T ++ + ++ K L K
Sbjct: 113 ATYKLAKAKYKLANAKNKLAK 133
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -2
Query: 275 GNLPSVCLFLNISNSGWVISRVLSIAMYLLSANLI 171
G++ +VCLFLN++N I R+++ + L +A +
Sbjct: 170 GSMENVCLFLNLANDP-TIERIITPRLALTTAEFL 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,133,593
Number of Sequences: 59808
Number of extensions: 454795
Number of successful extensions: 1136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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