Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120101.Seq
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   5.5  
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   29   5.5  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_25062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 221 RPNPAPCSR*RAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 343
           RP+  PC R  + +    +LH  ++L+TK G ++++   K+
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEKI 165


>SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 84  LRYVLGDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVQSR 263
           LR  L D  P+ FV + I   ++Y+N       H    +   ++ +    HH   S+ ++
Sbjct: 160 LRARLVDVDPISFVGEMICKRVEYINIRGNAAAHTTVAF---WQKSPICIHHTDSSITTQ 216

Query: 264 ATRCICTHTQCSLPN 308
            + C  + T  S+PN
Sbjct: 217 YSGCAFSATTGSVPN 231


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 755  CGPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSC 639
            C P+  FC   N++ +  T    R W SC + G  +T C
Sbjct: 4453 CNPAG-FCWCVNSDGMEETGTRRRGWPSCAITGRPLTPC 4490


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 171  AIRVHVDGKYKSTFEHADQIQHHAPDSVQSRATRCICTHTQCSLPNLA*FN 323
            A+R+HV G  K     + Q+  HAP +  S     +C  T C   N   FN
Sbjct: 1107 ALRLHVTGVTKLLLPLSRQLASHAPSATASVHRTLVCVAT-CVSTNKMRFN 1156


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 288 CGCKYSGSPCFARYLEHGAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 127
           C C Y G+    +  E      R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTGISEQIAE----LKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 257 KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLCTAQVRA 421
           K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL    V A
Sbjct: 325 KSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLIPLHVLA 381


>SB_25062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 625 CGWPLRRFAARVFAILPSRFSVASSHNHFVGKQNERSGCSAK 500
           C WPL  FAA  F+ L S  ++ +S N          GC+AK
Sbjct: 6   CLWPLCVFAALHFSDLLSHINIVNSDNPNFSVICGIEGCTAK 47


>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 619 WPLRRFAARVFAILPSRFSVASS 551
           WPL  FA ++  +L   FSVASS
Sbjct: 39  WPLGDFACKLHGVLVMAFSVASS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,196,481
Number of Sequences: 59808
Number of extensions: 558436
Number of successful extensions: 1455
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)