Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120098.Seq
(841 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 30 2.7
SB_56002| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.3
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_15815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 29 4.7
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 211 EALKRCEPYKKQEKVCLIGPAI-IGLTLTIPNCACRW 318
EAL +C P K+QE+ + G I IG TL +P+ A W
Sbjct: 820 EALNKCLPTKEQEQSIMNGRGIPIGHTLDVPHTAADW 856
>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 399
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 319 PNDTHNLVSSKSNQ*LQVLLNTLFLVFCKAHIVSKLHSKFLCRRQIMIRTKAPKTV*C-R 143
PND+ VS + N+ + +L TL L HI+ L +L +I + C R
Sbjct: 14 PNDSCYTVSCQGNEDISTMLRTLSLKELNPHIICVLCGGYLVDATTIIECLHSWQITCFR 73
Query: 142 FLCTRNFR 119
CT+ +R
Sbjct: 74 TSCTKLYR 81
>SB_56002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 25.8 bits (54), Expect(2) = 3.3
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 240 KTRKSVFNRTCNHWFDFDDTKLCVSLGYYYGIHYMIYLTLSAKNETLDDDELWAYTYENV 419
+ R + N T N F+F++ + + G Y+ ++ + +S N +LD E W Y E
Sbjct: 159 RPRITFSNMTRNSSFEFNEFVVDEN-GAYWKVN-ISKSEISQDNFSLDSSEAWQYYAELG 216
Query: 420 MALNL 434
LNL
Sbjct: 217 KGLNL 221
Score = 22.2 bits (45), Expect(2) = 3.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 93 RTVEDTDQERKFLVQR 140
RT++DT++ R+ LV R
Sbjct: 137 RTIQDTNETRRELVDR 152
>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/100 (20%), Positives = 40/100 (40%)
Frame = +2
Query: 521 QIVKKEDDLFKLVKSNCYKLSNIKFNNWKYLYLTTYGVYNLFTNSFHSNCPFLLGTTLPQ 700
+++++ D+F + S+CYK ++ + + +TT + H C +T+
Sbjct: 866 KVLRQASDMFSAMLSSCYKEGTLEVIPLQDVTMTTLKCVIHYAYGCHLPCD--ERSTICP 923
Query: 701 TLKKPTDEEYLPEDAFNYMLSLAPTSSAFIEFITSPKCAE 820
LK PE F ++ L + F+ C E
Sbjct: 924 ELKNIFSSVSNPESKFEFLFELLALADRFLMSELKANCEE 963
>SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 91 YVLWKILTKNENFSYRETDIKLFLELLCESL-FACDKEILNEALKRCEPYK 240
Y + +LT NF E + L L+ E++ F ++NE +K C+PY+
Sbjct: 277 YTMSSVLTYVNNFPDEENRLLLVHGLIDENVHFYHTSLLINELVKACKPYQ 327
>SB_15815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 616 VQVFPIVKFYVAQLVTIAFNQFE*VILFLYNLIVFALKTKLT----PGTTFSNFLKNPLH 449
V V IV F V L+ IA ++ F N ++FALK K T P + FS L +
Sbjct: 491 VSVLEIVLFTVLGLLCIA------ILAFTVNCVIFALKPKSTDENQPNSAFSKALFRKVP 544
Query: 448 TMSGG 434
GG
Sbjct: 545 AEDGG 549
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 354 TLSAKNETLDDDELWAYTYENVMALNLPPDIVCKGFFRKLEN 479
TL TL DE WA TY+ M DIV +G RKL +
Sbjct: 949 TLKKTEHTLLKDEQWADTYKRQM-----EDIVARGVARKLSD 985
>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 426 TPLHSRTCTPTIHRHLKFRF*PTESD 349
TP H RT PTI + ++++F E D
Sbjct: 102 TPRHCRTVQPTIPKDIRYQFRSAEED 127
>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 81 FFNLRTVEDTDQERKFLVQRNRHQTVFGAF 170
F ++ T + D +R+ +++RNRH+ V+ F
Sbjct: 685 FGDVETAQSFDTQREEMIERNRHRDVYQDF 714
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,818,362
Number of Sequences: 59808
Number of extensions: 541559
Number of successful extensions: 1407
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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