Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120096.Seq
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   4e-34
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                57   2e-08
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    32   0.65 
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)                29   6.0  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  142 bits (343), Expect = 4e-34
 Identities = 69/84 (82%), Positives = 75/84 (89%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           GNPIDGKGP    +R RVG+KAPGIIPR SV+EPM TGIKAV+SLVPIGRGQRELIIGDR
Sbjct: 51  GNPIDGKGPTGG-TRARVGVKAPGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDR 109

Query: 689 QTGKTALAIDTIINQQRFNKGEDE 760
           QTGKTA+AIDTIINQ+RFN G DE
Sbjct: 110 QTGKTAIAIDTIINQKRFNDGVDE 133



 Score =  100 bits (239), Expect = 2e-21
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +3

Query: 360 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 509
           MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDAL
Sbjct: 1   MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDAL 50



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +1

Query: 760 EKKLYCIYVAIGQKRSTVAQI 822
           EKKLYCIYVAIGQKRSTVAQ+
Sbjct: 145 EKKLYCIYVAIGQKRSTVAQL 165


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/81 (33%), Positives = 45/81 (55%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           G PID +GP++T  R  +  +AP  +   + +E ++TGIK V+ L P  +G +  + G  
Sbjct: 162 GEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGA 221

Query: 689 QTGKTALAIDTIINQQRFNKG 751
             GKT L ++ I N  + + G
Sbjct: 222 GVGKTVLIMELINNVAKAHGG 242


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 642 RELTALIPVCIGSRTDTRGMIPGALMPTLIRDFVSIGPLPSIGLPKRLLHAQGSA 478
           R+L A + V   +++DTR   P    PT   + +S G LP+  +P++ L   GSA
Sbjct: 51  RQLPASMTVGEPTKSDTRNRRPPPPPPTEAEESISRGSLPAPPVPQKGLPRSGSA 105


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
 Frame = +2

Query: 488  WACSRRFGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ---TGIKAVN-SLVPIG 655
            W CS+    P++ +GP    SR   G+  P   P     EP +      K  N S    G
Sbjct: 1457 WDCSKLESTPLEPRGP----SRASSGVSTPVATPEPKKEEPEEKPSPSPKTANKSESEKG 1512

Query: 656  RGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDEK 763
            +G+ E   G+ +  K     D    +   +KGE EK
Sbjct: 1513 KGESEKDKGESEKDKGESEKDK--GESEKDKGESEK 1546


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 485  DLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVRF 375
            D LSDG+    ++T  N  F+D+++   + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208


>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
          Length = 515

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 580 TWRLNADPHTGFRVDWSLAVNRVTKASTTRPRI 482
           TWR +  P   FR +W+L V   T     +P++
Sbjct: 377 TWRQHRKPKLPFRANWALKVTSYTWRQHRKPKL 409


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 330 SPQPGCSSSHKHERYHHQCSRH 265
           SP P  SS H H R H+ C  H
Sbjct: 61  SPLPLSSSHHHHHRRHYLCHHH 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,433,558
Number of Sequences: 59808
Number of extensions: 592624
Number of successful extensions: 1798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1787
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)