Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120093.Seq
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          36   0.036
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         29   5.4  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +2

Query: 71  KALDLGTNLPP-LGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 217
           KA+DL  +  P LG  RSKR++M++ D  V+ L+VEPDGTGL+CSL++ I
Sbjct: 84  KAVDLELDATPFLGNIRSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133


>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 2   AWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEP 178
           +W A    +  +  + D +G F + + +  +   LG G RS R+SM++ D  ++ + +EP
Sbjct: 86  SWAADQKAEN-ITFIPDGNGEFSEGMGMLVDKSDLGFGKRSWRYSMLVKDGVIEKMFIEP 144

Query: 179 DGTGLSCSLAD 211
           D  G    ++D
Sbjct: 145 DVPGDPFKVSD 155


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 68  IKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDL 166
           ++A+DL TN+  +G  R+  F +  VD +V+D+
Sbjct: 80  VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 14   QHNTKGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQ 160
            QHNT+ K+ ++A+ +  +    + G +   L     KR+S  +VDSK +
Sbjct: 908  QHNTRVKLPVVAERTAGYDDDEESGEDEDVLSRNAIKRYSQQLVDSKTK 956


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 273 SFLCYLICNAILHTAYFTLILSAREQDRPVPSGSTFRS----WTLLSTMTIENLL 121
           +F+ Y++ NA+L      +I   RE++  V  G    S    W    TM + NL+
Sbjct: 49  TFVHYIVANAVLIYTVIAIIRFLREENVEVEDGKNSSSKSDAWRFKETMLVVNLV 103


>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 180 SGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKL 61
           SG  + + T+++  T+EN++   PP G   V R R + +L
Sbjct: 3   SGCGYETTTMITNWTVENVIPLPPPEGH--VEREREIYEL 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,535,981
Number of Sequences: 59808
Number of extensions: 415192
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)