Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120070X.Seq
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)                 28   5.5  
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 27   9.6  

>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 51   PRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGF 185
            PR  G   SG+      S    +P SGK Q  D  N+Q     GF
Sbjct: 1198 PRGEGEEKSGSSGSSMESSPQGMPASGKTQITDNPNKQPGFPGGF 1242


>SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)
          Length = 276

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 346 IPYSSSMAFTSLVDTLANTI 405
           I Y++S+ FTSL+ T+ANT+
Sbjct: 7   ISYTASVLFTSLLSTVANTL 26


>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -2

Query: 446 MAVSTRGAVMASRWMVLARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKPVTEIADGG 270
           +++ST     AS ++  A++S   +K   E      +  L  + +W+ L    EIA+ G
Sbjct: 737 VSISTVALTAASSFVYFAKLSMNEMKGCEESCSFYFIFALFTFFVWMDLSFFGEIAEHG 795


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 39  QHHPPRRHGGSPSGNRHQQFPSQASTLPIS 128
           QH  P  HG  PS     + P  +ST P+S
Sbjct: 200 QHATPTGHGIPPSSTPQARAPPHSSTQPLS 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,048,484
Number of Sequences: 59808
Number of extensions: 297361
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)