Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120065.Seq
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              31   1.0  
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)              29   3.1  
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)                28   7.1  
SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)              28   9.4  

>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 402 CKHQLCSMCXXXXXXXXXXPCPLCRV 479
           C+H+ C MC           CP+CR+
Sbjct: 52  CEHEFCKMCFTQNVQEANLQCPMCRI 77


>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 309 CNICFSVAEIK-NYFMQPIDRLTIIPVLELDTCKHQLC 419
           C   ++   +K   F QP  RL+ IPV+E   C H +C
Sbjct: 33  CQFVYASVLLKFTNFTQPCPRLSGIPVVEASVCHHIIC 70


>SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 575 RLFYSIVRHSSRCI*SRPQRFGYAVNVEMQTFNPAQGTW 459
           +L + +++H  R    + +RF   +   ++ FN A GTW
Sbjct: 300 KLLFGVLQHGKRSQGGQKKRFKDTLKASLKAFNIAHGTW 338


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 641 DSNNAANSDD-TMLSESQAILKKLQIDIAEQTQLNI 745
           D+   A SD+ T + +  A+LKKL ID+  +T  NI
Sbjct: 369 DAFTIAGSDEVTFILKKMAVLKKLPIDVLNRTLFNI 404


>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
          Length = 320

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 590 ASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQA---ILKKLQIDIAEQT 733
           A  A ++   S+ DD+E++ N A++DDT+  +  A     +K  I IAE T
Sbjct: 2   AQAAGLVQYDSITDDSEETENHASTDDTVKKKVHADERSSRKYAIPIAELT 52


>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
          Length = 434

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 557 QWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAE 727
           Q  K  D + + SL S    ++L D+AE   N        + + + ++KKLQ+D  E
Sbjct: 308 QTRKYIDEYQSLSLRS----RALADEAESILNNMEDTTEQIFQEKKVVKKLQVDEEE 360


>SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)
          Length = 234

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 85  RLADTKNTRRTFRCFWDTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFRRT 264
           R    +NTRR+F  F  TK +     F   T+     +  +W       +VLRLV +R T
Sbjct: 147 RTTQNENTRRSFLAFLSTK-MSNAKLFLNRTINSHYNKVYVWHLL----RVLRLVGYRNT 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,130,827
Number of Sequences: 59808
Number of extensions: 397088
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)