Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120063.Seq
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)                   30   2.4  
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)                    29   5.6  
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         28   7.4  

>SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)
          Length = 1052

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 77  THYFTNDFAPYLMRFDDNDYNSNRFSDHMSETGYYMFVVKKSEVKPFE 220
           T+   NDF  YL   +     +  F+DH + TGYY FV       P E
Sbjct: 197 TNEIGNDFDWYLGIGETFSRFTGPFADHTTGTGYYAFVESSKPNNPGE 244


>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1677

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = +2

Query: 11   ATLEQTINHNTNICTVASTQEITHYFTNDFAPYLMRFDDNDYNSNRFSDHMSETGYYMFV 190
            +TL    NH+T  C V S   I    +  F P              F+ H+S  G++   
Sbjct: 1579 STLYIRTNHSTPCCDVTSVPYIRTNHSTPFQPTNQNAPRRHDAQTTFTTHVSNNGHFSHS 1638

Query: 191  VKKSEVKPFEIIFAKYVSNVVSNIQTT 271
            V  S   P ++ +A+     +   +TT
Sbjct: 1639 V-SSRPAPEQLQWAREYQRSLCQDRTT 1664


>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = -2

Query: 378  LRMRNFYAGFFNQIVRNHKSNFIKRYHKHTIIYHVIVVCIFDTTLL 241
            +  +NF AG FN   +  + N ++ Y++ +  +  I + ++D  ++
Sbjct: 1011 IEFQNFEAGIFNDSKKPGQKNKLRTYYQPSFDHKTIEIAVYDLQIV 1056


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -2

Query: 345 NQIVRNHKSNFIKRYHKHTII----YHVIVVCIFDTTLLTYLANII 220
           N + R H  N + R H H ++     H++V  I +  ++T + N I
Sbjct: 225 NMVTRTHNHNMVTRAHNHNMVTRIHNHIMVTRIHNHIMVTRIHNHI 270


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 274  NSCLYIRHHIAHVLGKYNFKRLYFTFFNH 188
            N+  Y+++ +  V+ +YN+ R+++TF  H
Sbjct: 2088 NTYTYMQNIVKSVIQRYNYGRIHYTFIIH 2116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,973,920
Number of Sequences: 59808
Number of extensions: 492698
Number of successful extensions: 1287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)