Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120060.Seq
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)                    46   4e-05
SB_12501| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          28   6.8  

>SB_10530| Best HMM Match : UBA (HMM E-Value=0.0016)
          Length = 74

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = +1

Query: 598 IVMSQANVSRAKAVRALKNNQSDIVNAIM 684
           +VM QANVSR KA+ ALK N++DIVNAIM
Sbjct: 13  LVMQQANVSRNKAIMALKKNENDIVNAIM 41


>SB_12501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 350 LFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAER 469
           LF  NSP++    HSD +++   A    LST   +A+  R
Sbjct: 40  LFSSNSPELSAAAHSDLHLLRSSASFSQLSTSRPIASISR 79


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 616 NVSRAKAVRALKNNQSDIVNAIMELTM*EKPSSQYLMS 729
           N+S+A+ +R  K   +D+VN + E     KP S+ + S
Sbjct: 237 NLSKAEKMRMFKRMYTDVVNDLQEQVKEAKPQSRPVFS 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,295,006
Number of Sequences: 59808
Number of extensions: 353846
Number of successful extensions: 1067
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)