Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120046.Seq
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)           30   1.8  
SB_19207| Best HMM Match : ig (HMM E-Value=1.2e-11)                    29   3.1  
SB_50700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)
          Length = 197

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 237 AHF-RRRDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIY 410
           AHF   RD+     +  +L GN +  +   + PSA NY+E  + L    +A++++ H + 
Sbjct: 131 AHFVPYRDSVLTWLLKDNLGGNSKTVMVATISPSADNYEETLSTLRYADRAKKIVNHAVV 190

Query: 411 NNE 419
           N +
Sbjct: 191 NED 193


>SB_19207| Best HMM Match : ig (HMM E-Value=1.2e-11)
          Length = 418

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 622 RQHHLDAFGRWSRRKNAIRRATHANKTCSGLW----CLECFLSC 503
           R H     G+ S   + +RRA H +  C   W    C E FL+C
Sbjct: 275 RHHQRIIEGKLSGIISTLRRAKHVSSKCRKYWIRAICFEAFLAC 318


>SB_50700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 137 HTSHRVRPTRIMT----TDGLSATATSSNVLKCQKWFCPFSTKRQSI 265
           H + +  P R+M      DGLS ++ +SN +KC      +ST++Q +
Sbjct: 36  HYACKGSPFRVMQWNVLADGLSGSSPTSNFIKCPSEALSWSTRKQRL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,524,432
Number of Sequences: 59808
Number of extensions: 494161
Number of successful extensions: 1376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)