Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120018.Seq
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3329| Best HMM Match : SNF2_N (HMM E-Value=1.5e-07) 61 1e-09
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24) 57 1e-08
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_46182| Best HMM Match : Helicase_C (HMM E-Value=7.5e-22) 44 2e-04
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 44 2e-04
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 44 2e-04
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 44 2e-04
SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42) 41 0.001
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 41 0.001
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 38 0.012
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 38 0.012
SB_56356| Best HMM Match : Helicase_C (HMM E-Value=1.3e-21) 36 0.028
SB_47493| Best HMM Match : Helicase_C (HMM E-Value=1.3e-16) 36 0.049
SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 32 0.61
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_53475| Best HMM Match : PAN (HMM E-Value=0.00029) 29 3.2
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_58445| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_32630| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-25) 28 9.9
SB_6207| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16) 28 9.9
SB_10205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_3329| Best HMM Match : SNF2_N (HMM E-Value=1.5e-07)
Length = 200
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK------MLNKNNDSTNRIKS 167
L A RW +TGTPI N+ D++S++ FL+ PF+DP WK + N D+ R+++
Sbjct: 84 LEAERRWVVTGTPIQNRIGDLWSIVRFLRLDPFSDPTWWKISIANGVTRGNEDAQERLQA 143
Query: 168 IIKKIVLKRDKSE 206
+IK I ++R K +
Sbjct: 144 LIKHISIRRLKDD 156
>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
Length = 1058
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = +1
Query: 532 TSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRIL 711
TSDDK++LVS + + L +FE +Q+ + G + ++ R FN+ I
Sbjct: 431 TSDDKVVLVSNYTQTLDLFEKLCRQRRYQHVRLDGSMSIKKRQKIVDRFNDPKGGDF-IF 489
Query: 712 LLSIKCGGVGLNLIGGNTL 768
+LS K GG GLNLIG N L
Sbjct: 490 MLSSKAGGCGLNLIGANRL 508
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + ++++ Q + I E++F K L G K EDR + FN A D+ +
Sbjct: 525 LKRNKHRVLMFCQMTSLMTILEDYFNWKGFPYLRLDGTTKSEDRGQLLSLFN-AKDSPYF 583
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS + GG+GLNL +T+
Sbjct: 584 VFLLSTRAGGLGLNLQAADTV 604
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKML---NKNNDSTNRIKSIIK 176
L +R +TGTP+ N +++S++NFL+ F + M K +++K ++K
Sbjct: 714 LQMEHRILLTGTPLQNNVEELFSLLNFLEPSQFPSQGAFLMEFGDLKTESQVDKLKQLLK 773
Query: 177 KIVLKRDKSEISFNI-PK-HTVEYVHVNLMKKK 269
++L+R K ++ NI PK T+ V + ++KK
Sbjct: 774 PMMLRRLKEDVEKNIAPKEETIIEVELTTVQKK 806
>SB_46182| Best HMM Match : Helicase_C (HMM E-Value=7.5e-22)
Length = 227
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 520 DILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQ 699
+ L + K+++ S + +LKI+ ++ + N + TG K+ DR F D
Sbjct: 72 ETLLQAKQKVLIFSSYTSHLKIYTDWCDKNNTPYSLLTGSTKIADRESEVANFQK--DDN 129
Query: 700 HRILLLSIKCGGVGLNL 750
+ +S+K GG GLNL
Sbjct: 130 KLLFFISLKAGGTGLNL 146
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L ++++ +Q L + E F L G +VE R + FN AD++
Sbjct: 1434 LKAGKHRVLIFTQMTRMLDVLEKFLNYHGYVYLRLDGSTRVEQRQILMDRFN--ADSRIF 1491
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+LS + GG+G+NL G +T+
Sbjct: 1492 CFILSTRSGGLGVNLTGADTV 1512
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/75 (34%), Positives = 40/75 (53%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
KI++ SQ + L I +++ + G +KVEDR F A+D + I LLS
Sbjct: 1215 KILIFSQMTKMLDILQDYCYLRGYQYSRLDGSMKVEDRREEIDAF--ASDPEKFIFLLST 1272
Query: 724 KCGGVGLNLIGGNTL 768
+ GG+GLNL +T+
Sbjct: 1273 RAGGLGLNLSAADTV 1287
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 12 ATNRWCITGTPIHNKHWDMYSMINFLQCRPFND 110
+ NR +TGTP+ N +++S++NFL F+D
Sbjct: 967 SANRLLLTGTPLQNNLAELWSLLNFLLPDIFDD 999
>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 764
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/81 (33%), Positives = 39/81 (48%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
++ + ++++LVS + + L I + K L G R FN A Q
Sbjct: 574 IHCTGERVVLVSNYSQTLDILQKLCTVKKYRYLRLDGSTPTAKRQSLVERFN-AKHCQDF 632
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS K GGVGLNLIG + L
Sbjct: 633 VFLLSSKAGGVGLNLIGASRL 653
>SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42)
Length = 784
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K++L S E L I EN+ + + GQ R+ FN D I L+S
Sbjct: 457 KVLLFSYSTELLNILENYVIGRGLVFSRLDGQTSPAQRMRVVREFNGNRDIF--ICLVST 514
Query: 724 KCGGVGLNLIGGNTL 768
K GG+GLN G N +
Sbjct: 515 KAGGLGLNFTGANVV 529
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +1
Query: 544 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 723
K ++VSQ+ +L I E F ++ I L G + E R+ F + ++ LLS+
Sbjct: 163 KSLVVSQFTSFLDILEYFLERDGIDYLRLDGTMGQEARVKVIDRFRDPDSP--KVFLLSL 220
Query: 724 KCGGVGLNL 750
GGVGLNL
Sbjct: 221 TAGGVGLNL 229
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L ++++ SQ + I E + + + G K+ DR F N D
Sbjct: 607 LKLQGHRVLIYSQMTRMIDILEEYMTFRKHKYMRLDGSSKISDRRDMVADFQNNKDIF-- 664
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+ LLS + GG+G+NL +T+
Sbjct: 665 VFLLSTRAGGLGINLTAADTV 685
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 18 NRWCITGTPIHNKHWDMYSMINFLQCRPF-NDPRVWKMLNKNNDSTNRIKSIIKKIVLKR 194
NR +TGTPI N +++++++F+ F N + +K+ +S KS+I + L R
Sbjct: 188 NRLLLTGTPIQNSMAELWALLHFIMPTLFDNHEEFNEWFSKDIESHAENKSLIDQNQLSR 247
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L + ++++ SQ V L I ++ +Q+ G ++ + R A FN A ++
Sbjct: 416 LKETGHRVLIFSQMVRMLDILADYLQQRRFLFQRLDGSIRGDLRKQALDHFN-AEGSEDF 474
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
LLS + GG+G+NL +T+
Sbjct: 475 CFLLSTRAGGLGINLATADTV 495
Score = 35.5 bits (78), Expect = 0.049
Identities = 17/90 (18%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +3
Query: 18 NRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNR-IKSIIKKI---V 185
+R +TGTP+ N +++++++FL F+ ++ ++ + ++ S+ K++ +
Sbjct: 253 HRLLVTGTPLQNSLKELWALLHFLMPERFSSWEAFEQIHSTQEQKDKGFASLHKELEPFL 312
Query: 186 LKRDKSEISFNIPKHTVEYVHVNLMKKKKR 275
L+R K ++ ++P + + V + +K+
Sbjct: 313 LRRVKKDVEKSLPAKVEQILRVEMSSLQKQ 342
>SB_56356| Best HMM Match : Helicase_C (HMM E-Value=1.3e-21)
Length = 149
Score = 36.3 bits (80), Expect = 0.028
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 535 SDDKIILVSQWVEYLKIFENFFKQKNIATLMYT---GQLKVEDRILAETTFNNAADTQHR 705
S +++L Q L I EN + N+ ++ Y G R FNN D
Sbjct: 26 SQHRVLLFCQLKSMLDIVENDLFKTNMPSVTYLRLDGSTPAGSRHSIVHRFNN--DPSID 83
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
+LLL+ GG+GLNL G +T+
Sbjct: 84 VLLLTTHVGGLGLNLTGADTV 104
>SB_47493| Best HMM Match : Helicase_C (HMM E-Value=1.3e-16)
Length = 252
Score = 35.5 bits (78), Expect = 0.049
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1
Query: 634 GQLKVEDRILAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNTL 768
G ++ E+R +A FN D + I LLS K GG GLNL+ +T+
Sbjct: 40 GSVRGEERYIAIKNFNEEQD--NFIFLLSTKAGGQGLNLMSADTV 82
>SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 34.7 bits (76), Expect = 0.086
Identities = 22/86 (25%), Positives = 44/86 (51%)
Frame = +3
Query: 6 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSIIKKIV 185
L + NR +TGTP+ N ++++++NFL F+ V + R+KS ++K +
Sbjct: 200 LRSANRLLLTGTPLQNNLHELWALLNFLLPDVFSSSDVLRPF-----LLRRLKSDVEKRL 254
Query: 186 LKRDKSEISFNIPKHTVEYVHVNLMK 263
L + ++++ + K + LMK
Sbjct: 255 LPKKETKVYTGLTKMQRSWYTKILMK 280
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +3
Query: 30 ITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKN---NDSTNRIKSIIKKIVLKRDK 200
+TGTP+ N ++++++ FL FN+ + N D ++ I+ +L+R K
Sbjct: 812 LTGTPLQNNLEELWNLLFFLDPVEFNNKNNFLTEFDNVAKEDQIKKLHDILGPHMLRRLK 871
Query: 201 SEISFNIPKHTVEYVHVNLMKKKKR 275
+++ IP + V V L +K+
Sbjct: 872 ADVLKGIPSKSELIVRVELSPMQKK 896
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 526 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 705
L ++++ SQ L + E+F + G + R A FN A +Q
Sbjct: 973 LREQGHRVLIFSQMTRMLDLLEDFLEGHGYKYERIDGSVNGAARQEAIDRFN-APTSQAF 1031
Query: 706 ILLLSIKCGGVGLNLIGGNTL 768
LLS + GG+G+NL +T+
Sbjct: 1032 CFLLSTRAGGLGINLATADTV 1052
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 634 GQLKVEDRILAETTFNNAADTQHRILLLSIKCGGVGLNLIGGN 762
G V+ R FN+ + R+ L+S K GG+G+NL+ N
Sbjct: 1236 GSTSVQLRQRWADIFNDPDNKTARLFLISTKAGGLGINLVAAN 1278
>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 257 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMH 436
N+ E+ L+ +L E + Y + + +RE ++ L+ + V ++ LR+IC HP L
Sbjct: 686 NKNEQVLFCRLSDEQRQLYEQYLDSREVQSILAGKYK---VFPGLIMLRKICNHPDLTSE 742
Query: 437 GRNLLE 454
+L++
Sbjct: 743 AGSLIK 748
>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -3
Query: 484 HIIHFKTVVCFQKISTVHGQIRVAADLPQFQY*P*HVLHLLQSA*RVFAFTRCHSFHIR 308
HI H Q+ TVH + + A L Q +Y H+ H+L++ + +TR ++ HI+
Sbjct: 198 HIKHMLRATLKQRKYTVHIKHMLRATLKQRKY-TVHIKHMLRATLKQRKYTRKYTVHIK 255
>SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 299 SEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 427
S ++ + + ++ +N S + QH++W L + ++C YL
Sbjct: 101 SRDSTVHDIPQQQVDNLFSAVGPFQHIVWFTLSVAKVCLTKYL 143
>SB_53475| Best HMM Match : PAN (HMM E-Value=0.00029)
Length = 431
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Frame = -1
Query: 447 RFLPCMAKYGWQQICLNFSISHNTC------CICCNRLSVFSLSRAATAFIYASS 301
R P M YG +QICLN I + C CIC + TA I S
Sbjct: 141 RLSPAMNHYGTEQICLNGGIVDHACVENELRCICLPEWTGSDCGLGQTAVILTPS 195
>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +3
Query: 66 MYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYV 245
MY+M + RPF + W + IK++ K D E F K +++
Sbjct: 117 MYTMHYNGEKRPFKCDKCWWSFKNPSGLREHIKAVHNSEKFKCDYCEKDFKYAKSLKQHI 176
Query: 246 HVNLMKKKKRC 278
V+ K+ +C
Sbjct: 177 EVHCDPKRVKC 187
>SB_58445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 492 LLLI*SILKQSFVSKRFLPCMA--KYGWQQICLNFSISHNTCCICCN 358
L+L+ + L FVS RFLP A +++ +N +N C CN
Sbjct: 5 LILVLACLLTVFVSGRFLPQAAFDNTAYEECMMNCETEYNNCFSNCN 51
>SB_32630| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-25)
Length = 474
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 773 HYNVFPPIKFNPTPPHLIESSKIRC*VSAALLNVVSAKILSSTFNWPVYINVAM 612
+Y +F + FNP P R V+ + ++ I+S +W Y V++
Sbjct: 193 YYKIFRFLCFNPVPTAFASIRNNRRRVNVRITRMIMVSIISFVISWSPYCVVSV 246
>SB_6207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 653 TGFWPRRHSIMLPILNIEFCC 715
TGFW +R LP LN F C
Sbjct: 49 TGFWDKRQKGELPALNFAFHC 69
>SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)
Length = 986
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 402 GKSAATRIWPCTVEIFW--KQTTVLKWII*AASANECSFSRR 521
G AA+ +WP + IFW K+ V W + + SFSRR
Sbjct: 480 GNKAASGVWPWQIGIFWDSKRGFVAAWDR-PSEKHRPSFSRR 520
>SB_10205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 159 IKSIIKKIVLKRDKSEISFNIPKH--TVEYVHVNLMKKKKRCTI 284
I I + + R K +P H TV++VH + +K+CT+
Sbjct: 895 IAQIKRYAIDDRQKGRTKHTVPHHVLTVDHVHFMIADAEKKCTV 938
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,385,184
Number of Sequences: 59808
Number of extensions: 492521
Number of successful extensions: 1415
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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