Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021146
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.47 
SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)              29   3.3  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   29   4.4  
SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 361 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSP 182
           R  +SR    +   R P+P H   H +    R+ R    RS +P HR   SR     +  
Sbjct: 233 RRRRSRSPRRRRRSRSPSPHH-RSHRSRSRSRSPRRRHSRSRSPTHRRHRSRSHSPEKKK 291

Query: 181 H 179
           H
Sbjct: 292 H 292



 Score = 31.1 bits (67), Expect = 0.82
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
 Frame = -3

Query: 352 QSREQGHQD---HHRGPAP------RHSEKHSASEADRAERFCRERSETPRHRNKPSRPV 200
           +  E+ H++   HHR  +P      R   + S S A       R RS +PR R +   P 
Sbjct: 182 EEEEEEHKESPVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPR 241

Query: 199 WSRR----SPHH 176
             RR    SPHH
Sbjct: 242 RRRRSRSPSPHH 253



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -3

Query: 352 QSREQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRRSPHHF 173
           +SR +  +   R  +PR   +  +          R RS +PR R+  SR    RR     
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRS 284

Query: 172 H 170
           H
Sbjct: 285 H 285


>SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)
          Length = 210

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 328 DHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWS 194
           D   GP+  H ++HS  +AD+ ++    +  +  HRN  +  V S
Sbjct: 3   DDESGPSKAHRKRHSGPKADKKKKRSDGKDTSIAHRNPKAFAVQS 47


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -3

Query: 367  TLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPS 209
            T+  V+  E+  +D  +GP  R  + H            R+RS  P +R   S
Sbjct: 1092 TIALVERLEEVERDGRQGPDSRRRQTHERRGGKEVREAIRDRSSQPDYRRADS 1144


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = -3

Query: 361 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERFCRERSETPRHRNKPSRPVWSRR-- 188
           R  +SR   H+DH     PR S  HS    D  ER             +PS    S R  
Sbjct: 205 RRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEERSPSGGRHEREDSREPSSAEESSRTS 263

Query: 187 SPH 179
           SPH
Sbjct: 264 SPH 266


>SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 181 VDSVETKQVEKVYSGDGASLSAPGRNAQLCRLRTPSVSRCAW 306
           VD +    V + Y   GAS  +  R AQ C LR+ S +   W
Sbjct: 22  VDVLAGSDVIQYYPDSGASAQSSIRRAQSCVLRSSSPATVVW 63


>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 325 HHRGPAPRHSEKHSASEADRAER 257
           H  GP+ RHS  H  +E++ A+R
Sbjct: 123 HKEGPSSRHSNVHELNESELAKR 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,949,801
Number of Sequences: 59808
Number of extensions: 352791
Number of successful extensions: 1136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)