Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021135
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 95 5e-20
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.71
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09) 30 1.6
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 29 5.0
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 5.0
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 6.6
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 6.6
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 8.7
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 95.1 bits (226), Expect = 5e-20
Identities = 40/45 (88%), Positives = 41/45 (91%)
Frame = +2
Query: 245 GYWSAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 379
G AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 65 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
Score = 92.7 bits (220), Expect = 3e-19
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +3
Query: 51 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 230
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 231 SAESWGTG 254
SAESWGTG
Sbjct: 60 SAESWGTG 67
Score = 85.4 bits (202), Expect = 4e-17
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +3
Query: 477 KDSRASLGCSRKVQEINKIKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 656
K + L S ++ + K AV L+ + A+ D+ K S+++RAGKGKMRNRR + RK
Sbjct: 143 KIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRK 202
Query: 657 GPLIIFNKDQGLTRAFRNIP 716
GPLII+N DQGL +AFRN+P
Sbjct: 203 GPLIIYNNDQGLRQAFRNLP 222
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +1
Query: 421 SVAATGVPALVQARGHIIEKIPELPLVVA 507
++AA+ +PAL+ ARGH IEKI E+PLV++
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVPLVIS 152
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 338 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 255
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
Length = 304
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 344 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHSSTP*FSTGLVTSLLAHAV 198
Y HH + H + +HHH H HS T +T ++T+++ +
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRH----HHHSFTTIATTTVITTIITTVI 202
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 347 TYVHHDTCYRRHPDRTYEYHHHGHA 273
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 338 HHDTCYRRHPDRTYEYHHHGHAEFGRQHSST 246
HH + RH R + YHHH H H T
Sbjct: 570 HHHLHHHRHHHRHHHYHHH-HYPHHHHHPCT 599
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/32 (28%), Positives = 13/32 (40%)
Frame = -1
Query: 350 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQH 255
R + HH + H + +HHH H H
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHH 240
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 338 HHDTCYRRHPDRTYEYHHH 282
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 118 GRGLAAPCTVSLFSEYTDTKGRATDRLI 35
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 344 YVHHDTCYRRHPDRTYEYHHHGH 276
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 338 HHDTCYRRHPDRTYEYHHHGH 276
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,892,412
Number of Sequences: 59808
Number of extensions: 421734
Number of successful extensions: 1423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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