Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021134
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               121   7e-28
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              36   0.034
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               36   0.045
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     33   0.18 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.73 
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.9  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.9  
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.8  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.8  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   9.0  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   9.0  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   9.0  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  121 bits (291), Expect = 7e-28
 Identities = 60/105 (57%), Positives = 69/105 (65%)
 Frame = +2

Query: 98  VGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGWYQTSAESW 277
           + VF E  + AG +  P V      P       S     + +   + +  G +QTSAESW
Sbjct: 6   ITVFNENGESAGQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAG-HQTSAESW 64

Query: 278 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
           GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 65  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 39/72 (54%), Positives = 53/72 (73%)
 Frame = +3

Query: 510 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSHRLRAGKGKMRNRRRIQRK 689
           KI E+PLV++D ++ + KT  AV  L+ + A+ D+ K   S ++RAGKGKMRNRR + RK
Sbjct: 143 KIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRK 202

Query: 690 GPLIIFNKDQGL 725
           GPLII+N DQGL
Sbjct: 203 GPLIIYNNDQGL 214



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 454 SVAATGVPALVQARGHIIERFPSFP 528
           ++AA+ +PAL+ ARGH IE+    P
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVP 148


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +2

Query: 245 GGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 406
           GGW Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +2

Query: 245 GGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 406
           GGW Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 258
           HH  CY  H    Y Y+ H H  + R H  YP  +H++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 356 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 264
           Y +HP  T+ YH H      R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261



 Score = 31.5 bits (68), Expect = 0.73
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 356 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 264
           Y +HP  T+ YHH  H +   ++ Q+P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 288
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 677 TTTVAHFTLTSTKTMRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 528
           +T + HF     KT R +H+K        P E     GL+D+LD  G+ Q
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 380 TYVHHDTCYRRHPDRTYEYHHHGHA 306
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -3

Query: 383 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 279
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 260  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 376
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 335 TYEYHHHGHAEFGRQHVQYPMI-QHWFGTSLLAHAVGLP-RVLGHRNVN 195
           +Y++HHHG  E   Q V    I + W    L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHH 315
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 151  GRGLAAPCTVSLFSEYTDTKGRATDRLI 68
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 519 ELPLVVADKVQEINKTKQAVIF-LRRLKAWSDILKVYKSHRLRAGKGKMRNRRRIQ 683
           E+P+ ++  + ++ K KQ ++  +R+    S ++  YK +R   G  K  + + IQ
Sbjct: 284 EMPINLSS-ISDVQKKKQKILSDIRQPNLHSSVIAQYKDYRKHCGNEKCSSNQNIQ 338


>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 182 PGQ*CSRFYVQELEAALLREQG-GWYQTSAESWGTGRAVARIPRVRGGGT 328
           P Q C   +    E+ +L   G G Y   AE  G     ARI  +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 377 YVHHDTCYRRHPDRTYEYHHHGH 309
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHH 315
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 371 HHDTCYRRHPDRTYEYHHHGH 309
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 212  QELEAALLREQGGWYQTSAESWGTGRA----VARIPR-VRGGGTHRS 337
            +  E+AL  E+  W Q  AES  T RA    +AR+    R  GT RS
Sbjct: 3432 EHAESALAAERAQWAQEKAESQNTIRAANEEIARLKEDARKAGTERS 3478


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 359 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 264
           CY +  +  + YHHH H      H Q+    H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,302,769
Number of Sequences: 59808
Number of extensions: 472173
Number of successful extensions: 1499
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)