Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021126
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8444| Best HMM Match : BRE (HMM E-Value=6.4)                        29   4.9  
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.5  

>SB_8444| Best HMM Match : BRE (HMM E-Value=6.4)
          Length = 502

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 538 IERLNKKGKSNSYANVLAHYKRTIIVVKLNDDQSNKTRMNVKIAGLAGDG 389
           ++RL+ +G S +  N +  Y   +IVVK+N   SN+ R  +     AG G
Sbjct: 117 LKRLSIEG-SQTLNNAVPQYHNALIVVKINCSTSNQQRKGLIRNNAAGIG 165


>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 547 VYCIERLNKKGKSNSYANVLAHYKRTIIVVKLNDDQSNKTRMNV 416
           V+ ++ L      N Y  +    K  +I+VK +D+QS + R  +
Sbjct: 66  VFTVDALKMMNSGNQYPRLSKPKKGQLILVKSSDEQSKRKRQGI 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,445,252
Number of Sequences: 59808
Number of extensions: 489155
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)