Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021120
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)                  83   2e-16
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)                  32   0.49 
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
          Length = 1128

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 38/60 (63%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
 Frame = +1

Query: 79  PASGHHDEE---ITEVFIHQAIHTIEFVLGSVSHTASYLRLWALSLAHAQLAEVAWNMLL 249
           P    H+EE     E F+HQAIHTIE+ LG +S+TASYLRLWALSLAHA+L+EV W+M+L
Sbjct: 718 PQENDHEEEEFDFGEAFVHQAIHTIEYCLGCISNTASYLRLWALSLAHAELSEVLWSMVL 777



 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 23/50 (46%), Positives = 34/50 (68%)
 Frame = +3

Query: 255 GLMSNDYQGGIFLYVVFAGWAAISVSILVLMEGLSAFLHTLRLHWVEFQS 404
           GL      G I  ++ F  WA ++++IL++MEGLSAFLH LRLHW+  ++
Sbjct: 780 GLNKEGAMGIIVTFLGFGLWAVLTIAILLIMEGLSAFLHALRLHWLSVEA 829


>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 949

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -2

Query: 371 VQEGREPLHEHEDGDGD---GRPAREHHVQEDPALVVVGHQTFLSSMFQATSASCACARE 201
           V+ G+E   +    +G    G+ A    +  D +L V  HQ  + +MF      CA    
Sbjct: 319 VKAGQEEFLKRAKANGQAAMGKYAGGQSLAGDQSLFVANHQIPVQTMFDPHPDGCAAIAM 378

Query: 200 SAHSRRYDAVCDTLPNTNSMVW 135
           S  ++    + +TLP T  +VW
Sbjct: 379 SPDAKYIATISNTLPQT-VLVW 399


>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 136 HTIEFVL--GSVSHTASYLRLWALSLAHAQLAEV-AWNMLLRKV*CPTT 273
           HT E +   G++ HT   LRL A +L H  L+E  A  ++L K+ C  T
Sbjct: 10  HTGEMISSWGNIYHTGEMLRLAASTLKHPNLSEENAVGLVLNKLLCLNT 58


>SB_20139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 38  KVTPRTARRAALPSRPRD-ITTKRSQRSSFTRPSI 139
           ++ P T     +P+ PRD ITTK + RSS   P +
Sbjct: 362 EILPTTTPTPYVPTTPRDMITTKHANRSSTEPPEV 396


>SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 797 QH*QDVNRINDIVRIYNNYSRHINTI 720
           QH Q+ N  N I+ +Y  YS++ NTI
Sbjct: 170 QHHQEPNNDNTIMYVYRGYSKNDNTI 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,271,942
Number of Sequences: 59808
Number of extensions: 361531
Number of successful extensions: 1039
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)