Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021117
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1)                      68   8e-12
SB_9948| Best HMM Match : Autophagy_N (HMM E-Value=4.9)                59   5e-09
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_23918| Best HMM Match : rve (HMM E-Value=0.013)                     30   2.6  
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 28   7.9  
SB_18432| Best HMM Match : VirB3 (HMM E-Value=6.3)                     28   7.9  
SB_3170| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 346

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
 Frame = +3

Query: 258 EFLSTAELAQREFTAEKLNLKYVK-----SVPSEVAIVT---SQPDFDEPLTVPRRPQWN 413
           EFL++A+LA  EFTAEKLN+ +V       V SE  +     +Q D  + L +PRRP+WN
Sbjct: 50  EFLASAQLAGTEFTAEKLNVTFVTPQYDTGVLSEEKVTNIKQAQEDNRQLLRIPRRPEWN 109

Query: 414 PGVTAEEQLNRERETFLDWRRHL 482
             ++AEE   +ER++F++WRR L
Sbjct: 110 KSMSAEELDLKERDSFVEWRRQL 132



 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
 Frame = +2

Query: 554 WRTLEKSDIVLILLDARDPLLFRCVDLEKYAKEQK--CQSILLLNKADLTSEYERKCWAE 727
           WR     D+++ ++DAR+P LFRC DL  Y KE      ++LL+NKAD  +  +R  WAE
Sbjct: 128 WRRQLAIDVIVQIVDARNPELFRCEDLAVYVKEVNPLKANLLLINKADYLTPSQRLKWAE 187

Query: 728 YFNKGNIRISLF 763
           Y+   NI+++ +
Sbjct: 188 YYKSRNIQVAFW 199



 Score = 33.5 bits (73), Expect = 0.21
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 169 NTMLHTTEVNDGYDWGRLNLQSVTAESSLKNF 264
           N + HT+E+NDG D  +  + S+T +S L  F
Sbjct: 20  NLLRHTSELNDGNDDNKFTISSITEQSDLDEF 51


>SB_9948| Best HMM Match : Autophagy_N (HMM E-Value=4.9)
          Length = 166

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
 Frame = +2

Query: 575 DIVLILLDARDPLLFRCVDLEKYAKEQK--CQSILLLNKADLTSEYERKCWAEYFNKGNI 748
           D+++ ++DAR+P LFRC DL  Y KE      ++LL+NKAD  +  +R  WAEY+   NI
Sbjct: 2   DVIVQIVDARNPELFRCEDLAVYVKEVNPLKANLLLINKADYLTPSQRLKWAEYYKSRNI 61

Query: 749 RISLF 763
           +++ +
Sbjct: 62  QVAFW 66


>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +2

Query: 563 LEKSDIVLILLDARDPLLFRCVDLEK--YAKEQKCQSILLLNKADLTSEYERKCWAEY 730
           +E +D++L +LDARDP+  RC  +E+   A     + +L+LNK DL  +   + W +Y
Sbjct: 335 VEAADVILEVLDARDPIGCRCPQVEQAVIAAGATKKLVLILNKIDLVPKDIAEKWLKY 392


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 545 KQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKEQKCQS--ILLLNKADLTSEYERKC 718
           K++W  L K      +LDARDPL  R   +E + K++K     I +LNK DL   +  + 
Sbjct: 71  KRIWNELYK------VLDARDPLGTRSKHIETFIKKEKSHKHLIFILNKCDLVPTWVTQQ 124

Query: 719 WAEYFNK 739
           W    ++
Sbjct: 125 WVSVLSE 131


>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
          Length = 1785

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -1

Query: 391  TVRGSSKSGCDVTMATSLGTDFTYFRLSFSAVNSLCASSAVERNS*VKTPQSLTGDSNVP 212
            T+ GS    C   MA ++G       ++ +  ++ C       +S V  PQ+ TG+S +P
Sbjct: 1095 TLCGSLSLRCGRLMAVAVGALHVARHVNTNGADTRCQHEVAVADSPVVCPQTHTGESAIP 1154

Query: 211  NHIHHSP 191
            ++   +P
Sbjct: 1155 DNQKAAP 1161


>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -3

Query: 203 PSFTSVVWSMVLSSTCFLLRFLENLSLM-----RALPRDSLFFLPIILTYTTKQGEIQLP 39
           P+FT+ +W  VL   C L+  L  L+++     + L R S + L  +       G + LP
Sbjct: 25  PAFTAKIWCAVLVIECILIITLNILTILTFARTKYLRRRSAYSLIHVAVADLLVGSVTLP 84

Query: 38  LTFLI 24
           + F +
Sbjct: 85  MNFYL 89


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 450 RETFLDWRRHLNELQAKLGAQ*HLMRETW 536
           RE+F  WR H  E +A   A  HL ++TW
Sbjct: 227 RESFESWREHAVEHKANRRAH-HLAKKTW 254


>SB_18432| Best HMM Match : VirB3 (HMM E-Value=6.3)
          Length = 179

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 450 RETFLDWRRHLNELQAKLGAQ*HLMRETW 536
           RE+F  WR H  E +A   A  HL ++TW
Sbjct: 145 RESFESWREHAVEHKANRRAH-HLAKKTW 172


>SB_3170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = -3

Query: 239 VTDWRFKRPQSYPSFTSVVWSMVLSSTCFLLRFLENLSLMRALPRDSLFFLPIILT---- 72
           +T W +  P+  P   +V+ + +       L+++++ +++  +PR+S  +LPI+ +    
Sbjct: 6   ITPWWYS-PRLAPLLFAVLVNRLADEWSTRLKYVDDATVLEFIPRNSPSYLPIVASGHGR 64

Query: 71  YTTKQ 57
           Y T+Q
Sbjct: 65  YATQQ 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,165,622
Number of Sequences: 59808
Number of extensions: 493557
Number of successful extensions: 1579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)