Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021105X
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   101   4e-22
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   8e-05
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.15 
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.1  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   2.5  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  28   3.3  
SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)             27   5.8  
SB_8721| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  101 bits (241), Expect = 4e-22
 Identities = 48/64 (75%), Positives = 55/64 (85%)
 Frame = +3

Query: 255 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVT 434
           KDEQDRCITIKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVT
Sbjct: 60  KDEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVT 117

Query: 435 AALR 446
           AALR
Sbjct: 118 AALR 121



 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 43/49 (87%), Positives = 46/49 (93%)
 Frame = +2

Query: 80  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAR 226
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAK 49


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +2

Query: 131  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARPERPV 241
            +RN S++AHVDHGKSTL D L+   G I+ +   + V
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV 1977


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 77  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARPERPVSLTRE 256
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+  + V L  E
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 140 MSVIAHVDHGKSTLTDSLVSKAGIIAG 220
           ++++ HVDHGK+TL D+L   + + AG
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAG 56


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 116 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA 223
           D+ +  R   +I+H D GK+TLT+ L+   G I  A
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEA 40



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 282 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRSL 452
           IK  A S F E+E +  + +        + +   IN++D+PGH DF+ +    L ++
Sbjct: 48  IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAV 103


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 140 MSVIAHVDHGKSTLTDSLVSKAGIIAG 220
           ++V+ HVDHGK++L D  +  A +I G
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEG 119


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 448 DRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 335
           +R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 245 ERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 194 PTSP*-GLTCRDRRERSQTCCGYSASCPSSHGS 99
           P SP  G  CRDR E +   CG  A+C ++ GS
Sbjct: 229 PFSPWFGDKCRDRNECAYKNCGVGATCLNALGS 261


>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
          Length = 134

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 169 AVIDVSDHRHVADIPLLVHHPTDLVYREIHH 77
           ++I +  H H +   +++HHP+ ++    HH
Sbjct: 27  SIIIIHHHHHPSSSIIIIHHPSSIIIIIHHH 57


>SB_8721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 345 NPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRSLMEPL 464
           NP   +    GFL+    S   V  SSE +A+LRS+ E L
Sbjct: 146 NPPVSKPRMSGFLLKSRKSSRSVTSSSESSASLRSMKENL 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,696
Number of Sequences: 59808
Number of extensions: 293701
Number of successful extensions: 968
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)