Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021051
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     31   0.77 
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.5  
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          28   7.2  
SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)                     28   7.2  
SB_13267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   9.5  

>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 690 GFDVAMEVYKMRWNGKPLHFLPFQNNGLTMLRLV 589
           G + AME  K+ WN     F+P+++ G+++L  V
Sbjct: 795 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 828


>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 380 WKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 478
           W+      L  DAI  +   IKKYQR F+ KDR
Sbjct: 482 WRPRPATLLDEDAIKKLKKDIKKYQRTFEIKDR 514


>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 658 EMEWKAAPFSSVPKQRPHHAEIGQTQNSHCRHEFVMVSDGTK-QTERDRMELASIHKQVR 482
           ++ WK        + + HH ++ Q  N+H   +  ++  GT  Q E +  E   I +++ 
Sbjct: 393 KVRWKYMVVDEGHRMKNHHCKLTQVLNTHYAAQHRILLTGTPLQVELNEEETILIIRRLH 452

Query: 481 RTIFTVENSLIFLDR 437
           +  + V+  +  L R
Sbjct: 453 KVEYVVKCDMSILQR 467


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 171 RLDIEMKTEMCQGLRQKEKVCKEGRRVGNGVFWQ 70
           R D+E    +C  + ++EK+ +E  RV   VFWQ
Sbjct: 677 RCDLERLRNLCYMVGKREKMRRELFRVRERVFWQ 710


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 383 KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQLHTIS 523
           K C+ LA +  A+V IF  +KK   + +S+   P+  +     H +S
Sbjct: 214 KVCRDLATLGPALVTIFHRLKKEIHIVESEAHKPHNIIPHHMSHNMS 260


>SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 172

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +3

Query: 21  APKHDSKYDPTLLSASI---AKRLRFRPSFLPYRLSPSDEVLGT 143
           AP    K D T L A +   A R R  PSF P  LSP    L T
Sbjct: 104 APGPGEKGDHTALKAGLSELAPRARSSPSFFPMALSPIPTPLAT 147


>SB_13267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 190 IKFLFSPTFSLNVSISMSTHSFQQDSSCHPSERKSFGSR 306
           +K LF PT  LNV + MS      + +  PS R S G R
Sbjct: 77  LKELFFPTMQLNVQLRMSYVPTLLNPADPPSRRLSVGDR 115


>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 440

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 685 KTNITSQFGPLTCMRLTGEPGTYDDNRI 768
           + N TS +GPL C + T  P T+D++ I
Sbjct: 128 RANETSSYGPLVCHKSTQTP-TWDESEI 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,206,662
Number of Sequences: 59808
Number of extensions: 593826
Number of successful extensions: 1692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)