Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021046
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   9e-07
SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)                   36   0.028
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                  30   2.5  
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)                 29   5.7  
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)                    28   9.9  

>SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +3

Query: 291 FEHTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEK 428
           F+ T+  +N   + AE     +Y EGCL CLTAY IY C +T Y +
Sbjct: 49  FDQTVNTINSILDDAEKVGVQSYIEGCLGCLTAYLIYSCIQTQYAR 94



 Score = 35.5 bits (78), Expect = 0.049
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +1

Query: 196 KIFIQRDYXEGTAVKFQTRF 255
           K+F+QRDY  GTA +FQT+F
Sbjct: 17  KVFLQRDYSHGTACRFQTKF 36


>SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
          Length = 274

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -2

Query: 564 WQLGTSIIVISMTRSPRRMDQLYEHLGGC-IPFRFVLL*ILRLSLNAFHNVSLYRYK*S- 391
           W L T  +V  +  +P  + Q+YE L GC +        ++ ++ N+F NV +Y YK   
Sbjct: 113 WTLFTVTLVSVLCMTPIGVQQIYEQLCGCDVDHDVTNFLLMMMNANSFINVVVYSYKIPE 172

Query: 390 -RQSDRQGIPHNMYC 349
            RQ     I + +YC
Sbjct: 173 FRQQFNAVISNYVYC 187


>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 609

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -2

Query: 369 IPHNMYCSLLSLPFQSAHSVSLLYVQRFVCLSFLQAQAESSLEFNCSAFXIVSLYEYFDS 190
           IP+N+Y S+ + P +    +   Y  R + L +L    E +   +C A   + + ++ D 
Sbjct: 228 IPYNLYKSITNKPLKRCVRLPTQYKDRKIDLLYLVVDGEFTPLLSCEACLDLEVLQFMDL 287

Query: 189 LLCGS 175
            L  S
Sbjct: 288 TLLDS 292


>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
          Length = 865

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 83  KLSNPLLHTIHARKWRTTES----LQDLTLLAVSRLPHSRESKYSYKETXXKALQ 235
           KL N LL  +H RKWR + +      DL  L  S+L  + +S     E   KA++
Sbjct: 554 KLRNILLMNLHVRKWRESRAPNHPRPDLNTLDESKLEGAWQSGTDLTERRKKAVK 608


>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
          Length = 1117

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 74  LCMKLSNPLLHTIHARKWRTTES----LQDLTLLAVSRLPHSRESK 199
           L  KL N LL  +H R+WR + +      DL  L  S+L  + +SK
Sbjct: 600 LTNKLRNKLLMNLHVRRWRESRAPSHPRPDLNTLDESKLEGAWQSK 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,082,755
Number of Sequences: 59808
Number of extensions: 510025
Number of successful extensions: 1176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)