Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021045
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 9e-19
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 66 3e-11
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 66 3e-11
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 66 3e-11
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 64 1e-10
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 64 2e-10
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 64 2e-10
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 60 2e-09
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 60 2e-09
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 58 6e-09
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 58 1e-08
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 57 1e-08
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 56 4e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 53 3e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 50 3e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-06
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 48 1e-05
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 44 1e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 42 4e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 4e-04
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 41 0.001
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 38 0.009
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 36 0.029
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 36 0.038
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 34 0.12
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 34 0.12
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 33 0.35
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 31 0.81
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 30 1.9
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) 28 7.6
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 91.1 bits (216), Expect = 9e-19
Identities = 46/80 (57%), Positives = 60/80 (75%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFV 412
+D + +MARTGSGKTA F++P+ EKL K +RALILSPTRELALQT +F+
Sbjct: 316 MDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKV----GIRALILSPTRELALQTQKFI 371
Query: 413 RELGKFTGLTSAAILGGESI 472
+ELG+FTGL S+ ILGG+S+
Sbjct: 372 KELGRFTGLKSSVILGGDSV 391
Score = 65.7 bits (153), Expect = 4e-11
Identities = 41/80 (51%), Positives = 51/80 (63%)
Frame = +1
Query: 493 VWLFSNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR 672
V L + VVATPGRFLH+ +EM LKL +++ VVFDEAD R
Sbjct: 384 VILGGDSVVATPGRFLHVVMEMELKLSSVEYVVFDEAD---------------------R 422
Query: 673 QTLLFSATLPKMLVEFARAG 732
QTLLFSATLP++LV+FA+AG
Sbjct: 423 QTLLFSATLPRLLVDFAKAG 442
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 68.9 bits (161), Expect = 4e-12
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
N+++ATPGR L H+ N++ +V DEADR+ E+GF E++++I LPS RQT+L
Sbjct: 696 NLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTVL 755
Query: 685 FSATLPKMLVEFARAGL 735
FSAT K + + A+ L
Sbjct: 756 FSATQTKNVEDLAKLSL 772
Score = 55.2 bits (127), Expect = 6e-08
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+TGSGKT F++P++E L K G + +I+SPTREL+LQT R+L K
Sbjct: 616 AKTGSGKTLAFLVPVVELLYKLQFKTRNGTGV--IIISPTRELSLQTYGVARDLLKHHNF 673
Query: 440 TSAAILGG-------ESIEQQFNVMSGSSPT*LLQHL 529
T I+GG E +++ N++ ++P LL HL
Sbjct: 674 TYGIIMGGVNRKAEAERLQKGVNLLI-ATPGRLLDHL 709
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 66.1 bits (154), Expect = 3e-11
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
++VATPGR + I + L ++ V DE D + +LGF +Q+Q+I RL + RQT+LFS
Sbjct: 258 VIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQTMLFS 317
Query: 691 ATLPKMLVEFARAGLSDP 744
AT+P + A L+ P
Sbjct: 318 ATIPPSIEAMASRLLNAP 335
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 168 KGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
K ++ GY PTPIQ + +P+ L+G+DV+ G K L
Sbjct: 209 KNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 66.1 bits (154), Expect = 3e-11
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
++V+ATPGR HI L L I+ +V DEADRL + FG+ L+ I +P RQTLL
Sbjct: 127 HVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLL 186
Query: 685 FSATLPKMLVEFARAGLSDPTLDKIRVD 768
FSATL + E + S P +++ D
Sbjct: 187 FSATLTDTMGELQKMSGSQPFSYEVQSD 214
Score = 58.8 bits (136), Expect = 5e-09
Identities = 35/78 (44%), Positives = 47/78 (60%)
Frame = +2
Query: 248 CCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGK 427
C A+TGSGKTA F LPIL+KL + P + A++L+PTRELA Q + LG+
Sbjct: 47 CIGCAKTGSGKTAAFALPILQKLC---DDP---YGIFAVVLTPTRELAFQIADQFKVLGR 100
Query: 428 FTGLTSAAILGGESIEQQ 481
GL A I+GG + +Q
Sbjct: 101 PIGLKEAVIVGGLDMMKQ 118
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F +GL+ ++ G K+PT IQ +P L G+D + + G K
Sbjct: 8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGK 57
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 SNIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 681
+NIVV TPGR L H+ +++I+V DEADR+ ++GF L I LPS RQTL
Sbjct: 172 TNIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTL 231
Query: 682 LFSATLPKMLVEFARAGL 735
L+SAT + + + AR L
Sbjct: 232 LYSATQTRSVKDLARLSL 249
Score = 62.5 bits (145), Expect = 4e-10
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+TGSGKT F++PI+E L K T L AL++SPTRELA QT + ++G L
Sbjct: 94 AKTGSGKTLAFLIPIIETLW--RQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDL 151
Query: 440 TSAAILGGESIE-QQFNVMSGS----SPT*LLQHL 529
++ I+GG+ ++ +Q +M + +P LLQH+
Sbjct: 152 SAGLIIGGKDLKNEQKRIMKTNIVVCTPGRLLQHM 186
Score = 41.5 bits (93), Expect = 8e-04
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
F +S L G+ K G+ PT IQ++ IP+AL+G+DV+ + G K L
Sbjct: 52 FSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTL 102
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/84 (32%), Positives = 53/84 (63%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+I V TPGR ++ + LK +++++ + DEAD+L + F +Q+ I + LP ++Q + F
Sbjct: 133 HIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQMMAF 192
Query: 688 SATLPKMLVEFARAGLSDPTLDKI 759
SAT P++L + +++PT ++
Sbjct: 193 SATYPEVLANHLKKYMTEPTFVRL 216
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELG-KF 430
+ A++G+GKT F + LE ++ +N ++ +IL+PTRE+A+Q + +G +
Sbjct: 55 AQAKSGTGKTCVFSVIALENVITESNC------IQIIILTPTREIAVQVKDVICAIGCHY 108
Query: 431 TGLTSAAILGGESIEQ 478
GL +GG S+E+
Sbjct: 109 DGLACKVFIGGISLEE 124
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLVXXXXXXRN 314
F S+ LS +L+G+ + G+++P+PIQ K IP+ G D++ + G K V N
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALEN 74
Query: 315 FL 320
+
Sbjct: 75 VI 76
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+++VATPGR L + + + +++V DEAD+L + F + L++I LP +RQ LLF
Sbjct: 174 HVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLF 233
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P + +F L P
Sbjct: 234 SATFPISVRDFKEKHLRKP 252
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKTA +++P+LE+ N ++AL+L PTRELALQT + ELGK G
Sbjct: 91 AKNGTGKTAAYLVPLLERTDTTKNC------IQALVLVPTRELALQTSQICIELGKHMGA 144
Query: 440 TSAAILGGESIE 475
GG S++
Sbjct: 145 QVMVTTGGTSLK 156
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +L GI ++G+ +P+PIQ ++IP+AL G+D++ + G K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/79 (37%), Positives = 47/79 (59%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+++VATPGR L + + + +++V DEAD+L + F + L++I LP +RQ LLF
Sbjct: 174 HVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLF 233
Query: 688 SATLPKMLVEFARAGLSDP 744
SAT P + +F L P
Sbjct: 234 SATFPISVRDFKEKHLRKP 252
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+ G+GKTA +++P+LE+ N ++AL+L PTRELALQT + ELGK G
Sbjct: 91 AKNGTGKTAAYLVPLLERTDTTKNC------IQALVLVPTRELALQTSQICIELGKHMGA 144
Query: 440 TSAAILGGESIE 475
GG S++
Sbjct: 145 QVMVTTGGTSLK 156
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ L +L GI ++G+ +P+PIQ ++IP+AL G+D++ + G K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 61.3 bits (142), Expect = 9e-10
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
+IV TPGR + L+ +IK++V DEAD + GF EQ+ ++ LP + Q +L
Sbjct: 117 HIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLL 176
Query: 688 SATLPKMLVEFARAGLSDP 744
SATLP ++E ++DP
Sbjct: 177 SATLPHEILEMTSKFMTDP 195
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFT 433
+ A++G+GKTA F + +L+ + +P +AL+LSPTRELA Q + V LG +
Sbjct: 39 AQAQSGTGKTATFSISVLQAIDTQLREP------QALVLSPTRELANQIQKVVLALGDYM 92
Query: 434 GLTSAAILGGESI 472
+ A +GG +I
Sbjct: 93 SVQCHACIGGTNI 105
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +1
Query: 559 CLKLDNI---KIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFARA 729
CL + N+ + +V DEADR+ ++GF E ++ I + S RQTLLFSAT+PK + FA++
Sbjct: 8 CLLVGNVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKS 67
Query: 730 GLSDP 744
L P
Sbjct: 68 ALVKP 72
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR--LPSS--RQ 675
+++VATPGR + + + LD+I+ +V DEADR+ ++GF Q++ I + +P + RQ
Sbjct: 977 HLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPKTGIRQ 1036
Query: 676 TLLFSATLPKMLVEFAR 726
TL+FSAT PK + AR
Sbjct: 1037 TLMFSATFPKEIQMLAR 1053
Score = 35.5 bits (78), Expect = 0.050
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
F+ + L +L + GYK+PTP+Q+ IPI +D++ + G K
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGK 925
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRAL 364
A+TGSGKTA F++PIL ++ + P + R+L
Sbjct: 919 AQTGSGKTAAFLIPILSRIYMEGPPAPPDFSYRSL 953
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/78 (37%), Positives = 45/78 (57%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 687
++VV TPGR + L +IK+ V DEAD + GF +Q+ ++ RLP+S Q +L
Sbjct: 211 HVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLL 270
Query: 688 SATLPKMLVEFARAGLSD 741
SAT+P ++E + D
Sbjct: 271 SATMPTDVLEVTNKFMRD 288
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNL-RALILSPTRELALQTLRFVRELGKF 430
+ A++G+GKTA F + IL+++ N K G + +AL+L+PTRELA Q + V LG +
Sbjct: 127 AQAQSGTGKTATFAISILQEIDT-NYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDY 185
Query: 431 TGLTSAAILGGESIEQ 478
+ A +GG ++ +
Sbjct: 186 MHVKCHACIGGTNVRE 201
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +1
Query: 559 CLKLDNI---KIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFARA 729
CL + N+ + +V DEADR+ ++GF E ++ I + S RQTLLFSAT+PK + FA++
Sbjct: 8 CLLVGNVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKS 67
Query: 730 GLSDP 744
L P
Sbjct: 68 ALVKP 72
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 58.4 bits (135), Expect = 6e-09
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR-----LPSSR 672
+++V TPGR L + L L +K VV DE DR+ ++GF E ++E+ A
Sbjct: 197 DVLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYAEDREDKP 256
Query: 673 QTLLFSATLPKMLVEFAR 726
QTLLFSATLP V A+
Sbjct: 257 QTLLFSATLPPWAVNTAK 274
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/87 (36%), Positives = 43/87 (49%)
Frame = +2
Query: 236 DRERCCSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVR 415
D E ARTG+GKT F LP++EKL G+ + L+++PTRELA Q
Sbjct: 109 DGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFE 168
Query: 416 ELGKFTGLTSAAILGGESIEQQFNVMS 496
L + L I GG E Q N ++
Sbjct: 169 NLK--SNLEVYCIYGGMPYEPQENAIN 193
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +2
Query: 251 CSMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQ 397
C+ A TG+GKTA F+LPILE+LL +PT +R L+++PTRELA+Q
Sbjct: 51 CACAATGTGKTAAFMLPILERLLY---RPTQSPAIRVLVITPTRELAIQ 96
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 168 KGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQLVXXXXXXRNFLFRTT 332
+ + + G+ PTPIQ TIP+AL GKDV G K L+R T
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPT 77
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/77 (38%), Positives = 44/77 (57%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
I +ATPGR + + L +V DEADR+ ++GF Q++ I ++ RQTL++S
Sbjct: 185 ICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMWS 244
Query: 691 ATLPKMLVEFARAGLSD 741
AT PK + A LSD
Sbjct: 245 ATWPKEVQGLAHDFLSD 261
Score = 35.5 bits (78), Expect = 0.050
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 284 ACFVLPILEKLLVPNNKPT--PGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAIL 457
A F+LP + + N++P PG L+L PTRELA Q +GK L S I
Sbjct: 111 AQFILPGIVHI---NHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIY 167
Query: 458 GG 463
GG
Sbjct: 168 GG 169
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 55.6 bits (128), Expect = 4e-08
Identities = 35/75 (46%), Positives = 43/75 (57%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTG 436
+A TGSGKT F LPIL+ LL + P + L ALIL+PTRELA Q LG G
Sbjct: 7 LAETGSGKTGAFALPILQALL---DNP---QRLFALILTPTRELAFQISEQCEALGSGIG 60
Query: 437 LTSAAILGGESIEQQ 481
+ A I+GG + Q
Sbjct: 61 VKCAVIVGGIDMMSQ 75
Score = 34.7 bits (76), Expect = 0.087
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 508 NIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQ 636
+I++ATPGR + H+ L +K +V DEADR+ + F ++
Sbjct: 84 HIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKE 127
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL----PSSRQ 675
N++V TPGR + + L ++ ++ DEADR+ ++GF ++ I + S RQ
Sbjct: 840 NLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESMGMPDKSERQ 899
Query: 676 TLLFSATLPKMLVEFARAGLSD 741
TL+FSAT P+ + A L+D
Sbjct: 900 TLMFSATFPEEIQRLAGDFLND 921
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLL---VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF 430
A+TGSGKTA F+LP++ ++ + ++ + + +A+ ++PTRELA Q R+
Sbjct: 755 AQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHG 814
Query: 431 TGLTSAAILGGESIEQQ 481
T L GG S+ Q
Sbjct: 815 TMLRPVVCYGGVSVSHQ 831
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F+ L L + K YK+PTP+Q+ +IPI + G+DV+ + G K
Sbjct: 712 SFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGK 761
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 52.8 bits (121), Expect = 3e-07
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS---RQ 675
+++VVATPGR L L I +V DE DR+ +G EQL++I + RQ
Sbjct: 218 ADVVVATPGRLLD--------LYKITYLVMDEPDRMLGMGMEEQLRKIVGLATGTSRARQ 269
Query: 676 TLLFSATLPKMLVEFARAGLSDP 744
TLL+SATLP+ L AR+ + +P
Sbjct: 270 TLLWSATLPESLERLARSAVLNP 292
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPT-PGKNLRALILSPTRELALQTLRFVREL 421
+A TGSGKT + LP+ +L+ P+ PG ALIL+PTREL Q V E+
Sbjct: 115 LAETGSGKTLAYSLPLC--MLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEM 168
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+F + L + + K+ ++ PTPIQ +++ ++G+D++ E G K L
Sbjct: 73 SFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTL 124
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR----LPSSRQ 675
+ +V TPGR + L +I+ ++ DEADR+ +LGFG + ++ SRQ
Sbjct: 604 HFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMTAKESRQ 663
Query: 676 TLLFSATLPKMLVEFA 723
TL+FSAT P + A
Sbjct: 664 TLMFSATFPDEIQHLA 679
Score = 49.6 bits (113), Expect = 3e-06
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
A+TGSGKTA ++LP+L L+ P ++ AL ++PTRELA Q R+ T +
Sbjct: 523 AQTGSGKTAAYMLPVLTS-LIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPI 581
Query: 440 TSAAILGGESIEQQ 481
GG S+ Q
Sbjct: 582 KVCVCYGGVSVPYQ 595
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F + ++ I++ GY++PTP+Q+ +PI + G+D++ + G K
Sbjct: 480 SFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGK 529
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +1
Query: 577 IKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFARAGLSDP 744
++I+V DEADR+ ++GF ++ + +LP+ RQ LLFSAT + A L +P
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNP 59
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 48.8 bits (111), Expect = 5e-06
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLV---------PNNKPTP----GKNLRALILSPTRELALQT 400
A TGSGKT F +PI++ + P++K + G L ALI++PTRELALQ
Sbjct: 175 AETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQV 234
Query: 401 LRFVRELGKFTGLTSAAILGGESIEQQ 481
+ + K+T + AAI+GG + +Q
Sbjct: 235 KDHLVKAAKYTSVKVAAIVGGMAAPKQ 261
Score = 35.5 bits (78), Expect = 0.050
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALT-GKDVVQWPELGPEKQL 287
++ +G++ +L+ + +G+ +PTPIQ +IP AL +D++ E G K L
Sbjct: 132 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTL 183
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 48.0 bits (109), Expect = 9e-06
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIK---IVVFDEADRLFELGFGEQLQEI--------- 648
+ I+V TPGR + + ++ N + +V DEADR+F++GF Q+ +I
Sbjct: 195 AEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKVMRII 254
Query: 649 -CARLPSSRQTLLFSATLPKMLVEFARAGLSDP 744
C R RQT++FSAT P+ + AR L P
Sbjct: 255 DCIR--PDRQTVMFSATFPRQMEALARKILDKP 285
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 147 GLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVV 254
G+ +L + K Y++PTPIQ + IP+ ++G+D++
Sbjct: 111 GVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMI 146
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 344 GKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 481
G+++ A++++PTRELA+Q R ++ K L + GG I +Q
Sbjct: 142 GRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQ 187
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLL-VPN--NKPTPGKNLRALILSPTRELALQTLRFVRELGK 427
+A TGSGKTA F +P+L ++ +P + ALIL+PTRELA Q + + G+
Sbjct: 144 VAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGR 203
Query: 428 FTGLTSAAILGG 463
G+ + +++GG
Sbjct: 204 PLGIRTVSVIGG 215
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 162 VLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+L+ + K GYK PTPIQR+ IPI L +D++ E G K
Sbjct: 112 ILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGK 151
Score = 26.6 bits (56), Expect(2) = 0.13
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 583 IVVFDEADRLFELGFGEQLQEICARLPSS 669
+ V ADR+ ++GF ++Q+I LP S
Sbjct: 210 VSVIGGADRMIDMGFEPEVQKILEHLPVS 238
Score = 26.2 bits (55), Expect(2) = 0.13
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 670 RQTLLFSATLPKMLVEFARAGLSDPTLDKIRVDWKLP 780
RQT++F+AT+P + A+ L L+ + D + P
Sbjct: 263 RQTVMFTATMPPQVERLAKNYLRKKLLELLNKDLEPP 299
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 46.0 bits (104), Expect = 4e-05
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Frame = +2
Query: 257 MARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTG 436
+A+TGSGKTA F+ P L ++ + G LI +PTREL Q R GK
Sbjct: 560 IAKTGSGKTAAFLWPALVHIM-DQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYN 618
Query: 437 LTSAAIL-GGESIEQQFNVMSG-----SSPT*LLQHLGASYTSALR 556
+ A+ GG EQ + G ++P L+ H+ A T+ R
Sbjct: 619 IHVVAVFGGGNKYEQSKALQEGAEIVVATPGRLIDHVKAKATNLHR 664
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/80 (37%), Positives = 38/80 (47%)
Frame = +1
Query: 505 SNIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 684
+ IVVATPGR + L + +VFDEADR+F++GF LL
Sbjct: 641 AEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGF----------------ALL 684
Query: 685 FSATLPKMLVEFARAGLSDP 744
FSAT K + R L DP
Sbjct: 685 FSATFKKKVEHLCRDILVDP 704
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F G ++ I K Y QPT IQ + +PIAL+G+D++ + G K
Sbjct: 518 SFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGK 567
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 508 NIVVATPGRFLH-ICIEMCLKLDNIKIVVFDEADRLFEL-GFGEQLQEICARLPSSRQTL 681
+I++ TPG L I C + + + V DEAD + L G +Q I L Q L
Sbjct: 223 HIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLHKDCQVL 282
Query: 682 LFSATLPKMLVEFARAGLSDPTLDKIR 762
LFSAT + +++FA + +P + ++R
Sbjct: 283 LFSATYDEDVMKFAETVVPNPIIIRLR 309
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +2
Query: 254 SMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGK 427
+ +++G+GKTA FVL +L + V KP P + + LSPT ELA QT + +GK
Sbjct: 147 AQSQSGTGKTAAFVLTMLSR--VDATKPYP----QVICLSPTYELARQTGKVAEAMGK 198
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 233 IDRERCCSMARTGSGKTACFVLPILEKLLVPNNKP---TPGKNLRALILSPTRELALQTL 403
I R A+TGSGKT ++ P++ +L + K RA I+ P RELA Q L
Sbjct: 413 IHRHHVICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQIL 472
Query: 404 RFVRELGKFTGLTSAAILGG 463
+ + L S ++GG
Sbjct: 473 KTAKSLCHHARFRSVGLIGG 492
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 669
+++VATPG L + L ++ +V DEAD +F+ F EI + SS
Sbjct: 507 DLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILHTINSS 560
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEKQL 287
+F +GL VLK + QPT IQ TIP + V+ + G K L
Sbjct: 379 SFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTL 430
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 132 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVQWPELGPEK 281
+F+ L L + K YK+PTP+Q+ +IPI + G+DV+ + G K
Sbjct: 135 SFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGK 184
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMC--LKLDNIKIVVFDEADRLFEL---GFGEQLQEI--CARLPS 666
+I+V TP R +H+ + ++L N++ ++ DEAD+LFE GF EQ+ I P
Sbjct: 258 DILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPD 317
Query: 667 SRQTLLFSATLPKMLVEFA 723
+ LFSATL + E+A
Sbjct: 318 IHRG-LFSATLSNGIEEWA 335
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 162 VLKGITKRGYKQPTPIQRKTIPIALTG 242
++ + +RGY PTPIQ + P+ G
Sbjct: 174 IIHNVQERGYTTPTPIQMQATPLMAHG 200
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TG 436
A++G GKTA FVL L++L +P G+ + L++ TRELA Q + K+ +
Sbjct: 91 AKSGMGKTAVFVLATLQQL-----EPVDGQ-VSVLVMCHTRELAFQIHKEYERFCKYMSN 144
Query: 437 LTSAAILGGESIEQQFNVMSGSSP 508
+ A GG +I++ + + P
Sbjct: 145 IKIAVFFGGINIKKDQQTLKTNCP 168
Score = 34.7 bits (76), Expect = 0.087
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE 618
+IVV TPGR L + E L L + K + DE D++ E
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TG 436
A++G GKTA FVL L++L +P G+ + L++ TRELA Q + K+ +
Sbjct: 91 AKSGMGKTAVFVLATLQQL-----EPVDGQ-VSVLVMCHTRELAFQIHKEYERFCKYMSN 144
Query: 437 LTSAAILGGESIEQQFNVMSGSSP 508
+ A GG +I++ + + P
Sbjct: 145 IKIAVFFGGINIKKDQQTLKTNCP 168
Score = 34.7 bits (76), Expect = 0.087
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE 618
+IVV TPGR L + E L L + K + DE D++ E
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 36.3 bits (80), Expect = 0.029
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 356 RALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESI 472
+AL+LSPTRELA Q + V LG + + A +GG +I
Sbjct: 5 QALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNI 43
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 35.9 bits (79), Expect = 0.038
Identities = 26/82 (31%), Positives = 35/82 (42%)
Frame = +1
Query: 511 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 690
++VATP FL + LD + VVFD+AD L E E C L + +
Sbjct: 317 VLVATPPCFLRMLKRCYTSLDRLCHVVFDDADMLAEYFTAEIKDHKCMTLAYLTEKSIPK 376
Query: 691 ATLPKMLVEFARAGLSDPTLDK 756
A LV ++ D T DK
Sbjct: 377 ADNAYQLVRRSQGNTLDDTSDK 398
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 565 KLD--NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQ 675
KLD +IK++V DEAD + GF EQ+ ++ LP + Q
Sbjct: 30 KLDTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 619 LGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFARAGLSDPTLDKIRVDWKLPST 786
+GF + I LP R+T LFSAT + RAGL +P ++ V KL T
Sbjct: 1 MGFEASINTILGYLPKQRRTGLFSATQTDEVEALVRAGLRNPV--RVTVREKLTKT 54
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 32.7 bits (71), Expect = 0.35
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +2
Query: 260 ARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGL 439
+ TG+GK+ F+LP ++ PG+ +I+ PTRELA Q L V L +
Sbjct: 204 SETGTGKSLVFLLPSVQD---------PGRGYGTIIVVPTRELASQMLYEVSRLLGDKSI 254
Query: 440 TSAAILGGESIEQQFNVMSGS 502
A+ + G + +Q ++ S
Sbjct: 255 V-ASFVSGVDLSRQEKLLKDS 274
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 31.9 bits (69), Expect = 0.62
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 135 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIAL 236
++ +G++ +L+ + +G+ +PTPIQ +IP AL
Sbjct: 74 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPAL 107
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 508 NIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP 663
+IV TPG+ + L +K + DEAD L G + + +I ++P
Sbjct: 137 DIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKIP 188
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 574 NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVEFA 723
+++ V+FDE + + G +E+ LP +L SAT+P L EFA
Sbjct: 257 DVEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNTL-EFA 305
>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 305 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILG 460
L + PNN P PGK I+S +A+ T R++ F G + I+G
Sbjct: 134 LSRAHAPNNNPVPGKRRTRQIIS---MVAMDTERWLFPRAAFRGAINNQIMG 182
>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
Length = 1127
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 287 CFVLPILEKLLVPN-NKPTPGKNLRALILS 373
C L ++ +++P+ KP PGKNL +L +S
Sbjct: 105 CLFLVLIAHVILPDLRKPLPGKNLMSLSMS 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,640,383
Number of Sequences: 59808
Number of extensions: 415521
Number of successful extensions: 979
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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