Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021041
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15) 66 4e-11
SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22) 66 4e-11
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24) 58 6e-09
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18) 52 5e-07
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 33 0.19
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 29 3.1
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
Length = 221
Score = 65.7 bits (153), Expect = 4e-11
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 48 MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEIDG 221
MPN K YF + E RL A GG +ED R++ E W + K KT G +PVLE+DG
Sbjct: 1 MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMKAENKTIMGYLPVLEVDG 60
Query: 222 KQYAQSTAICR 254
QY +S AI R
Sbjct: 61 IQYCESMAIFR 71
>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
Length = 79
Score = 65.7 bits (153), Expect = 4e-11
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +3
Query: 48 MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQMPVLEIDG 221
MP+ K YYF + E RL+ A G EFEDNR++ WP+ K + PFGQ+P+L ID
Sbjct: 1 MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQVPLLVIDD 60
Query: 222 K-QYAQSTAI 248
K + AQS AI
Sbjct: 61 KIKLAQSLAI 70
>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
Length = 102
Score = 58.4 bits (135), Expect = 6e-09
Identities = 37/81 (45%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = +3
Query: 18 NYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TP 188
N SLL P MP+ K +YF + E RL A G E+ED R E W KP+ P
Sbjct: 14 NISLLPF-PKMPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPP 72
Query: 189 FGQMPVLEIDGK-QYAQSTAI 248
FGQ+P+L ID K + AQS AI
Sbjct: 73 FGQVPLLVIDDKIKLAQSMAI 93
>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
Length = 195
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 51 PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEI-DG 221
P + YF +A E R+LL F D R++ +W K + PFG++P+LEI DG
Sbjct: 3 PTYRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRCPFGELPLLEISDG 62
Query: 222 KQYAQSTAICR 254
++ AQS AI R
Sbjct: 63 RKLAQSHAIFR 73
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 93 ESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRTSVAST 272
E QRL+L +E + NR ++ W E P P +LEI +Q Q A + S
Sbjct: 768 ERQRLILEQQERE-QQNRAAAAGWGEHAPVGPPPVKSLLEIQEEQARQQKAKAQNQQLSR 826
Query: 273 DSPGP 287
P P
Sbjct: 827 SQPAP 831
>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 69 YFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK 176
YF V+A GE R+LL F + R E+WP K
Sbjct: 95 YFDVRARGECIRVLLHLADVPFTEERHGLEDWPAVK 130
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 451 DTDEEQRSYRAWQVDLGRLLYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVKA 627
D D +A VD GRL ++ YL ++ PD + ++P K + VL IP A
Sbjct: 496 DGDLPSAVRQASLVDGGRLRPDAVWGYLNGLVS-PDGQPRFPRLSKVAQLVLTIPHSNA 553
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 490 VDLGRLLYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVKA 627
VD GRL ++ YL ++ PD + ++P K + VL IP A
Sbjct: 533 VDGGRLRPDAVWGYLNGLVS-PDGQPRFPRLSKVTQLVLTIPHSNA 577
>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 57 VKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK 182
V +YF + E RL++ G + + + E+WP K K
Sbjct: 54 VTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,356
Number of Sequences: 59808
Number of extensions: 313034
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -