Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0112
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_54593| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-06)                 29   4.5  
SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)                28   7.9  
SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)                   28   7.9  
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)          28   7.9  

>SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 269 PLKSQHFCLSYTASLKCSSVPSFLEAIFICPVYILGYI*KKLEKNVNYLRKYKK 430
           P     +C+ YT  + CS   +  +++FI  V   G I KKLE   N + + KK
Sbjct: 133 PTTRPGYCVRYTGHI-CSKSINHKKSVFISAVNQQGSIEKKLEIAFNTISRSKK 185


>SB_54593| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-06)
          Length = 244

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 593 IDIFCTFPTLRAMGR*P-ESFARYTWDLEV*RQSLDAVWY*YIGFVYSRVPLQNMFFYIF 417
           +DIF  F ++ A+     E      W L+  R + D ++Y  +G  ++     ++F+Y+F
Sbjct: 3   VDIFSGFASIFALTVIAIERLFAVLWPLKH-RVASDQLYYSLVGLTWALSATISLFYYLF 61

Query: 416 VSNLHFSLIFFKYILKYI 363
              +    +FF  ++ +I
Sbjct: 62  AYQVLLIKVFFYLVIFFI 79


>SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)
          Length = 210

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 528 ACKTLRSTTHRSQRRKCTKNVDILIKFVNSYIGLQILSLPWVDEHVT 668
           AC +    T + QR     N+D+ IK    +I   +LS+ W D HV+
Sbjct: 73  ACASCYHQTSQ-QRLNYITNLDLNIKPSKVHIREGLLSITWTDRHVS 118


>SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)
          Length = 448

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 528 ACKTLRSTTHRSQRRKCTKNVDILIKFVNSYIGLQILSLPWVDEHVT 668
           AC +    T + QR     N+D+ IK    +I   +LS+ W D HV+
Sbjct: 99  ACASCYHQTSQ-QRLNYITNLDLNIKPSKVHIREGLLSITWTDRHVS 144


>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
          Length = 724

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 206 ATNTGQDLGVNDRTHALTVHRPLKSQHFCLSYT 304
           A+ TGQ   + D  H  +    L S+ FCLS T
Sbjct: 12  ASQTGQAKAIADEIHEKSASNGLNSKLFCLSLT 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,988
Number of Sequences: 59808
Number of extensions: 379109
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)