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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0102
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              157   5e-51
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             31   0.73 
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   2.2  
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   3.9  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   5.1  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.1  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       28   6.8  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   6.8  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   9.0  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   9.0  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  157 bits (380), Expect(2) = 5e-51
 Identities = 76/114 (66%), Positives = 94/114 (82%)
 Frame = +3

Query: 6   STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 185
           S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 186 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 347
           +P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 68  VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 62.5 bits (145), Expect(2) = 5e-51
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = +3

Query: 459 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 560
           HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = +3

Query: 90  NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 254
           + + K  L+E+ I ++K+ E   + + KS       PKLKA Q    +   +  KK    
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320

Query: 255 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 347
               K V+       LP+ +H+   AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
 Frame = +3

Query: 15   IIKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYV 182
            ++++SG   +S E+   +     E N+ LK +L E    L +T+ +E E+ N K + +YV
Sbjct: 1681 VLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYV 1734

Query: 183  PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 332
             M KL++ Q        ELEK+      ++   ++I P K S  T VA  +
Sbjct: 1735 NMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 544 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIALY 365
           T+R  ++ ++DW ++  C    CW +S  T+ S     LT +++P  +  + K    A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 329 FVSNTSFVAGLRQDLTVSNKDYMFTTE 249
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 42  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 209
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K  +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 94   PTSKPNFGSFTLQKLKKLNYTIRS 165
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 299 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 159
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 573 TNKVRGTRRSLRVPLASCIQTGRCPL 496
           TN+ +G+RRS R P  S  +T R P+
Sbjct: 294 TNETKGSRRSTRNPNQSPAETARTPI 319


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +1

Query: 73  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 171
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 484 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 377
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 180 VPMPKLKAFQKIQIRLVRELEKKFSG 257
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
 Frame = +3

Query: 33  AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 197
           A+  +   +  Q   E++T+ + K  +RE  ITK K +     E   +++++    + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296

Query: 198 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 311
               + + + +RE+E++F     K+   + +R++  +   K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,925,131
Number of Sequences: 59808
Number of extensions: 364476
Number of successful extensions: 1032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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