Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0075
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06) 31 0.85
SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12) 29 3.4
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 29 3.4
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 29 3.4
SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12) 28 6.0
SB_48626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_58033| Best HMM Match : HSA (HMM E-Value=3.2) 28 7.9
SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87) 28 7.9
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7) 28 7.9
SB_16781| Best HMM Match : RRS1 (HMM E-Value=1.6) 28 7.9
>SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06)
Length = 417
Score = 31.1 bits (67), Expect = 0.85
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Frame = +2
Query: 218 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY--- 373
C G+T L+ TW + + G + NG L A Y VD C QT+ Y
Sbjct: 227 CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGQTISLYGTA 286
Query: 374 ---MKRFGQD--CNGDGVVNCYDYMAIHKKGGYG--CTGE 472
+ G D CNG + ++++GG C G+
Sbjct: 287 WTVYQEGGVDKVCNGQTISLYGTAWTVYQEGGVDKVCNGQ 326
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Frame = +2
Query: 218 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY--- 373
C G+T L+ TW + + G + NG L A Y VD C T+ Y
Sbjct: 11 CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGWTISLYGTA 70
Query: 374 ---MKRFGQD--CNGDGVVNCYDYMAIHKKGGYG--CTGE 472
+ G D CNG + +++++GG C G+
Sbjct: 71 WTVFQEGGVDKVCNGQTISLYGTAWSVYQEGGVDMVCNGQ 110
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Frame = +2
Query: 218 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCAAQTVQNY 373
C G T L+ TW + + G + NG L A Y VD C QT+ Y
Sbjct: 347 CNGWTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQDGGVDKVCNGQTISLY 403
>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 251 TWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMKRFGQ 391
TW +W+ G P ++ S A + S T P+ A + QN + G+
Sbjct: 38 TWFFWSSRGYPVVSLASQPASQSVSRATPRPHTAPKWRQNTITAQGK 84
>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +3
Query: 297 SHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANF 476
+HL + P + + A R + + KD+++TAT S AMTT+ + P
Sbjct: 2 THLIVITPAESLIDAIMATARHADRSVKDISQTATTLVRSVAMTTYLLKQNHQFATPNRS 61
Query: 477 LLTM*TCLTSASMSSRSTDLK 539
L+ +C S+ + SR K
Sbjct: 62 LM---SCTESSPILSRQRRTK 79
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 371 YMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 499
++K G + +GDG ++ + +AI GY +L N ++VF
Sbjct: 923 FVKEIGSEGSGDGQLSFPESVAIMPNSGYIVVSDLSNNRIHVF 965
>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
Length = 769
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/98 (21%), Positives = 38/98 (38%)
Frame = -2
Query: 342 GSTVQLE*ASGASGERPLMVGFPASAQ*PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHT 163
G TV L + V PA + + ++P++ +H PE +QP
Sbjct: 211 GVTVTLRREEQPVNTGTIGVPSPAKQRQYEITPRKPNLPQTHTPQSRRPEEPQDIQPPMA 270
Query: 162 SVTGGSSETSAKQTPATNSNAQT*SQPKPLRRKYTNKK 49
T G+ + TP + + +P P++ K + K
Sbjct: 271 PETPGTPPRPSTSTPDKGLHRRNEPEPLPIKTKKSPHK 308
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/92 (27%), Positives = 38/92 (41%)
Frame = +3
Query: 261 TGLMPENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRS 440
T ++PE + + T+ T AA T AP + T E + A+ T +
Sbjct: 35 TTMVPETTSAPAT--TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--T 90
Query: 441 TRREATGAPANFLLTM*TCLTSASMSSRSTDL 536
E T APA L T T +++ +TDL
Sbjct: 91 VASETTDAPATTLATETTAAPETTVAPETTDL 122
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/92 (27%), Positives = 38/92 (41%)
Frame = +3
Query: 261 TGLMPENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRS 440
T ++PE + + T+ T AA T AP + T E + A+ T +
Sbjct: 1110 TTMVPETTSAPAT--TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--T 1165
Query: 441 TRREATGAPANFLLTM*TCLTSASMSSRSTDL 536
E T APA L T T +++ +TDL
Sbjct: 1166 VASETTDAPATTLATETTAAPETTVAPETTDL 1197
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/92 (27%), Positives = 38/92 (41%)
Frame = +3
Query: 261 TGLMPENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRS 440
T ++PE + + T+ T AA T AP + T E + A+ T +
Sbjct: 2362 TTMVPETTSAPAT--TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--T 2417
Query: 441 TRREATGAPANFLLTM*TCLTSASMSSRSTDL 536
E T APA L T T +++ +TDL
Sbjct: 2418 VASETTDAPATTLATETTAAPETTVAPETTDL 2449
>SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)
Length = 85
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 368 NYMKRFGQDCNGDGVVNCYDYMAIHKKG 451
N++ FG NG G NC ++AI+ KG
Sbjct: 50 NHVTSFGSLGNGRGQFNCPSHVAINSKG 77
>SB_48626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 183 QMQPR-HTSVTGGSSETSAKQTPATNSNAQT*SQPKPLRRKYTNKKILLKNDVYAS 19
Q++PR S SS T TP T+S +T P P R +K L++ Y +
Sbjct: 173 QLRPRTKPSCINPSSSTPEDSTP-TDSATRTVESPSPRRNPARERKALIRYGFYTN 227
>SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 146 VPKHRRNRLRQPTATHKPDHSRSHCVGNTQTKKYY*KMMCMRPS 15
VP RRN + T++ +SR+ C G ++ + K+M + P+
Sbjct: 30 VPTKRRNDTKTITSSTAHAYSRATCTGPELSRDRFRKVMSLNPT 73
>SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)
Length = 249
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 407 GVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQYRS 535
G NC +A+ K GG +G L + ++ F + V YRS
Sbjct: 23 GDFNCVSNLALDKWGGSALSGTLGYPALHTFLERFRVLDLYRS 65
>SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)
Length = 339
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 190 SLANAAETHFRHRGEFRNIGETDSGNQQQRTNLITAEAIASEIHKQKN 47
++ +A E R RG RN ET S + + A A ASEIH++ N
Sbjct: 40 AVRSARELDARVRGLVRNATETRSLLLRAAAGVDVAIANASEIHREAN 87
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 406 VAVAVLAKSFHVVLDGLRGAVRVYSAARVGIRSVR*ETIDGGFSGISPVA 257
V +AVL +V+ GL G + V A + R R E + G+SG VA
Sbjct: 633 VGLAVLIAILFLVIFGLIGYIVVLKRAGLTTRKKRPEADNPGYSGFQNVA 682
>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
Length = 577
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 115 CRSLFRRCFGTPPCDGSVSRLHL 183
C S R TPPCD S+ LH+
Sbjct: 23 CDSSMRLLHATPPCDSSMRLLHV 45
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 97 LCVAVGCRSLFRRCFGTPPCDGSVSRLH 180
L V C S R TPPCD S+ LH
Sbjct: 43 LHVTPPCDSSMRLLHATPPCDSSMRLLH 70
>SB_16781| Best HMM Match : RRS1 (HMM E-Value=1.6)
Length = 295
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 182 KCSRDTLPSQG-GVPKHRRNRLRQPTATHKPDHSRSHCVGNTQTKK 48
+C D L +Q K+++ R R P ATH PD ++ + T+T++
Sbjct: 157 RCESDGLVAQAINSDKNQKQRRRGP-ATHLPDKAQHSTIRTTKTQE 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,264,690
Number of Sequences: 59808
Number of extensions: 555974
Number of successful extensions: 2144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2141
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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