Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0062
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 33 0.10
SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30) 32 0.24
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3) 31 0.55
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21) 30 0.96
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32) 30 1.3
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05) 29 2.2
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34) 29 2.9
SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_4731| Best HMM Match : Herpes_UL3 (HMM E-Value=8.3) 28 5.1
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44) 28 5.1
SB_59594| Best HMM Match : zf-C3HC4 (HMM E-Value=0.21) 27 6.8
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) 27 6.8
SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082) 27 6.8
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26) 27 6.8
SB_7290| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=6.8) 27 6.8
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.0
SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4) 27 9.0
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 27 9.0
SB_21099| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1e-25) 27 9.0
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 27 9.0
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 33.5 bits (73), Expect = 0.10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 236 RPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSE 415
RP ++SP T P A+ P + + ++ AREV PP+ + +Q V P+
Sbjct: 182 RPTSARQSPQGTRPTRPSSAHASPSSIYAPRDPRQFAREV--PPEPRPFAQEVPQEAPAP 239
Query: 416 NRKSLPKDSASNVQGS 463
R SA++ Q S
Sbjct: 240 RRYGTRPTSAASTQPS 255
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 33.5 bits (73), Expect = 0.10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 236 RPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSE 415
RP ++SP T P A+ P + + ++ AREV PP+ + +Q V P+
Sbjct: 1763 RPTSARQSPQGTRPTRPSSAHASPSSIYAPRDPRQFAREV--PPEPRPFAQEVPQEAPAP 1820
Query: 416 NRKSLPKDSASNVQGS 463
R SA++ Q S
Sbjct: 1821 RRYGTRPTSAASTQPS 1836
>SB_55227| Best HMM Match : Ank (HMM E-Value=1.9e-30)
Length = 662
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 293 ANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSE--NRKSLPKDSASNVQ 457
+N E ++N +QK ++++ P YQ +Q +E + K +P DSA++++
Sbjct: 282 SNVHNEGTCQTNGLQKVSKDISRSPHYQNNAQSAQDCNQNELKSEKHIPFDSATDIE 338
>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
Length = 169
Score = 31.1 bits (67), Expect = 0.55
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Frame = +2
Query: 233 QRPLDGKKSPPRELVT-------PPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQP 391
+RP DG+ PP E PP ++ P + R + + PP + P
Sbjct: 21 KRPGDGRSRPPSESRPRPPYDDRPPSESRPRPPYDERPPSESRPRPPYERPPSESRPRPP 80
Query: 392 VWSTRPSENRKSLPKDSASNVQGSRIIPIQMEVSSTETR 508
R SE R P D V +R P + ++ETR
Sbjct: 81 YDDRRTSETRPRPPYDE-RRVSENRPKPPYDDRRTSETR 118
>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 14 PRAAGSLPIKHLIPVTPRKQNSQPQPEFSAQPQK------EAVYVNQ-EPIYYCPDSPKS 172
P AG +P P P + ++ + +PQ+ YVNQ P+Y P +P
Sbjct: 260 PEVAGLVPPHQPAPGIPPQPMNEGNSDHHGRPQRLRQAPQRLTYVNQGTPVYMNPIAPYE 319
Query: 173 IPPWV 187
+ PW+
Sbjct: 320 MQPWM 324
>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
Length = 631
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 260 PPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTS 385
PP+ PP+ + EPE V ++ E K PPK Q S
Sbjct: 165 PPQPETVPPQPGSEEPEPVSQAPEPPKPKTSAPEPPKPGQMS 206
>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
Length = 425
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 296 NTEPEWVRRSNEMQKGAREVDSP---PKYQQTSQPVWSTRPSENRKSLPKDSASNVQGSR 466
NTE ++ NE G EVD P P QQ QP+ RP E + P + Q +
Sbjct: 322 NTEKILTQQQNEFMGGLVEVDGPKEDPSRQQRQQPL--KRPQETTRD-PDPNLFEAQAQQ 378
Query: 467 IIPIQMEVSSTETR 508
P + S T +R
Sbjct: 379 YSP-RTRPSQTPSR 391
>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
Length = 520
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 254 KSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRP-SENRKSL 430
K PP + + EPE + S ++ K SP + + ++P RP S NR S
Sbjct: 261 KGPPERKIAGLQSVKEEPETTQSSEQLPK---RPSSPQRPKSPNRPASPQRPRSPNRPSS 317
Query: 431 PK 436
P+
Sbjct: 318 PQ 319
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 233 QRPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQP 391
QR L+ + + LV P + + EP V R +E ++ PK Q T QP
Sbjct: 409 QRELEEIEEIRKRLVDMPAEDDNEPMQVSRESEREEEDSSDGFKPKLQPTFQP 461
>SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34)
Length = 272
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Frame = +2
Query: 173 IPPWVXXXXXXXXXXXXVWCQRPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGARE 352
IPPW V R + + P + PP + V R+ + A E
Sbjct: 77 IPPWTRARSPVDRARSPV--DRARSPRGTAPEQDPPPPWTVPEQETPVDRARSPRGTAPE 134
Query: 353 VDSPPKYQQTSQPVWS-TRPSENRKSLPKDSA 445
D P +Q+ P W+ R +R P DSA
Sbjct: 135 PDPPVVQRQSQIPPWTRARSHVDRARYPVDSA 166
>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 368 KYQQTSQPVWSTRPSENRKSLP 433
K Q +P+ RPSENRKS+P
Sbjct: 792 KASQVRRPLDPNRPSENRKSVP 813
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 242 LDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKG-AREVDSPPK 370
L KSP + L TPP+ + P+ +N Q+G A +D P+
Sbjct: 599 LQPMKSPSQVLQTPPKSPVSVPQRCSPANLQQRGPAENIDQLPR 642
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 287 RDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSE 415
R +NT EW + + A E+ + P Y ++ WS PSE
Sbjct: 640 RMSNTAFEWKGVVSFTGQTAEEISTDPVYIDINRQEWSVAPSE 682
>SB_4731| Best HMM Match : Herpes_UL3 (HMM E-Value=8.3)
Length = 240
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +2
Query: 35 PIKHLIPVTPRKQNSQPQPEFSAQPQKE 118
PI++++P+ P KQN++ P+ +P+K+
Sbjct: 4 PIEYIVPLNPAKQNNKISPQ---KPEKD 28
>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
Length = 2581
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 50 IPVTPRKQNSQP---QPEFSAQPQKEAVYVNQ-EPIYYCPDSPKSIPPWV 187
IP P K+ + +P+ Q + YVN P+Y P +P + PW+
Sbjct: 404 IPPQPMKEGNSDHHGRPQRLRQAPQRLTYVNPGTPVYMNPIAPYEMQPWM 453
>SB_59594| Best HMM Match : zf-C3HC4 (HMM E-Value=0.21)
Length = 235
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 290 DANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVW 397
DAN E W+R + E D P+Y+ P W
Sbjct: 198 DANNEYHWLRENVIPPPPPGEHDKRPQYEAIESPSW 233
>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
Length = 1736
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 366 LNTNRQVSRCGQHGLRKIAKVC 431
+NT + C +HG RK+++VC
Sbjct: 1049 VNTRDDKTHCKRHGYRKLSRVC 1070
>SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082)
Length = 279
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 302 EPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPS 412
+P +R++++ K + P KYQ TSQ V + +PS
Sbjct: 201 QPAKYQRTSQVSKNQPSIKQPAKYQTTSQ-VSNNQPS 236
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 236 RPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSE 415
+PL + P++L TPP +NT P + + R +PP Q + + P +
Sbjct: 55 QPLKPPSNTPQQLTTPPHQSNT-PRPLTPPSRQSNNPRP-HTPPSCQSNTPRPLTPPPRQ 112
Query: 416 NRKSLP 433
+ + P
Sbjct: 113 SNTTQP 118
>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +3
Query: 297 IQNLSGLGGVMKCKRAHVRSTVRLNTNRQVSRCGQHGLRK 416
+QN +GGV K K A R VRL T + S GLRK
Sbjct: 683 MQNKGPIGGV-KLKFADHRRNVRLKTRHRPSTNPVRGLRK 721
>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
Length = 800
Score = 27.5 bits (58), Expect = 6.8
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Frame = +2
Query: 89 PEFSAQPQKEAVYVNQEPIYYCPDSPKSIPPWVXXXXXXXXXXXXVWCQRPLDGKKSPPR 268
P+ + +PQ A QEP Y P + P ++ + Q P + K P+
Sbjct: 288 PQETQEPQYTAPQETQEPQYIAPQETQE-PQYI--APQETQEPQYIAPQEPQEPKNIAPQ 344
Query: 269 ELVTPPRDA---NTEPEWV--RRSNEMQKGAREVDSPPKY---QQTSQP 391
E P A EP+++ + + E Q A + P+Y Q+T +P
Sbjct: 345 ETQEPQYIAPQETQEPQYIAPQETQEPQYIAPQETQEPQYISPQETQEP 393
>SB_7290| Best HMM Match : RNA_POL_M_15KD (HMM E-Value=6.8)
Length = 143
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 314 VRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSE 415
++R E +K A E PP S+P + TRP E
Sbjct: 105 LQRKLESKKKATESSRPPSRPTASKPEYLTRPPE 138
>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1980
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 309 SGLGGVMKCKRAHVRSTVRLNTNRQVSRCGQHG 407
SG G + +C+R + R+ + TN V C Q G
Sbjct: 421 SGAGSLTRCQREYRRAVLYSMTNGYVPLCKQDG 453
>SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)
Length = 611
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 32 LPIKHLIPVTPRKQNSQPQPEFSAQPQKEAVYVNQEPIYYCPDSPKSIPPWV 187
LP+ + TP +Q P+ S P E + +Q+P P++PK IP V
Sbjct: 45 LPVPEI--ATPAQQPETPKDIPSMVPVPE-IATSQQPETIQPETPKDIPSMV 93
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 287 RDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSLPKDSASNVQGSR 466
RDAN P R +NE +G R+ + P+ + + R N ++ A QG R
Sbjct: 789 RDANDGPRGGRDANEGPRGGRDANEGPRGGRDANK--GPRGGRNTNAVGAQQADARQGQR 846
>SB_21099| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1e-25)
Length = 137
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 309 SGLGGVMKCKRAHVRSTVRLNTNRQVSRCGQHG 407
SG G + +C+R + R+ + TN V C Q G
Sbjct: 66 SGAGSLTRCQREYRRAVLYSMTNGYVPLCKQDG 98
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 234 RDHWMVKRVHRESLLHHQGMLIQNLSG----LGGVMKCKRAHVRS-TVRLNTNRQVSRCG 398
RDHW VK +++ + +Q +I G G AH S +++ N + S+CG
Sbjct: 870 RDHWDVKPLNKYFVTRNQSTIIAFAVGGNYKPGNGFSIVGAHTDSPCLKVKPNSKKSKCG 929
Query: 399 QH 404
H
Sbjct: 930 FH 931
>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1322
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2
Query: 248 GKKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKS 427
GKK P +TPP T+P V S+ K +++ Q ++ PS++ S
Sbjct: 614 GKKLSPDHFLTPPLRRQTQPSPVSTSSRTSK--KKLHEQEMITQ-AEGKRVAPPSDSESS 670
Query: 428 LPKDSASNVQGSRIIP 475
+N + S+ +P
Sbjct: 671 ETSKKPANKKASKALP 686
>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 278 TPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSLPKDSAS--- 448
TPP +EP +VR + + + + P + + P T P +LP+ S+S
Sbjct: 302 TPPHSVRSEPGYVR--SAVATTSHSLPRGPVHAKKGPPP-PTLPKRGTATLPRTSSSGRP 358
Query: 449 NVQGSRIIPIQM 484
++ SR +P+ +
Sbjct: 359 SIPTSRCLPLDV 370
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,044
Number of Sequences: 59808
Number of extensions: 356138
Number of successful extensions: 1216
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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