Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0056
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             274   4e-74
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       204   4e-53
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    47   1e-05
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              27   6.9  
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 27   9.2  
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  274 bits (671), Expect = 4e-74
 Identities = 124/160 (77%), Positives = 140/160 (87%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 216 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
           V FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK 
Sbjct: 61  VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120

Query: 396 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
           GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PS
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPS 160


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  204 bits (497), Expect = 4e-53
 Identities = 90/118 (76%), Positives = 105/118 (88%)
 Frame = +3

Query: 162 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 341
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60

Query: 342 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
           PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PS
Sbjct: 61  PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPS 118


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
 Frame = +3

Query: 156 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 320
           IK  V  + +DP R A +A+V          +++L IAP+ +  G  +    GK    A 
Sbjct: 56  IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111

Query: 321 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 500
           L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS  +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169

Query: 501 KVLPS 515
           K + S
Sbjct: 170 KEVSS 174


>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 153 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHDP*LRPVNLTLVPN 1
           I +V +  + +   R++SS C KRKL R    E+ + D   R + L  V N
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKDLKERNIELNAVAN 520


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -2

Query: 470 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 297
           T SI ++ + +   + GTC+     +  FK+ H     + H  + H ++N   C +  ++
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 296 KLACVEPFGSNEELLP 249
              CV  F   +++ P
Sbjct: 136 NQRCVS-FNLKKQITP 150


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -3

Query: 391  FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSGAMKSSFLVLNLYGSRKCTT 212
            F+S L T +P+   P G+TF T +V F    +NW + + SG + +   ++ +  S +   
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121

Query: 211  AKG 203
             +G
Sbjct: 1122 IRG 1124


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 240 TCMDRGSVQQPKVHLYQGHGLY 175
           T  D G +Q P  HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 330 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 449
           G+  PV  +P G  +C   + +G R   AR   G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 FGCCTLPRSIQVQDK 250
           FGCC +P ++  QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
 Frame = +3

Query: 60  RKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVV----------KDIIHDPGRGAPL 209
           R+ + ++ V H  K  G     SL    RHG + GVV          K+++H    G P 
Sbjct: 407 REDSPAISVPHLIKDLGLVVTLSLAVKSRHGNVSGVVAVDAPLDTLMKEVVHFSTTGLPY 466

Query: 210 AVV 218
           A+V
Sbjct: 467 AIV 469


>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 479 YSCTLSIRIVSNHSGEVSRG 420
           Y+CTL+I +   H GE+ RG
Sbjct: 11  YACTLNINVGVKHPGEMFRG 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,126,775
Number of Sequences: 59808
Number of extensions: 365503
Number of successful extensions: 874
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)