Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0050
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 3.0
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 29 3.9
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1) 29 5.2
SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48) 29 5.2
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) 29 5.2
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 28 6.8
SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9) 28 6.8
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 28 9.0
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 28 9.0
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 103 bits (248), Expect = 1e-22
Identities = 66/169 (39%), Positives = 87/169 (51%), Gaps = 21/169 (12%)
Frame = +2
Query: 293 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW----RDDTEE 460
E +E KFY EVHA R I +G EP D+EC P D+ EE
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEECRWPSDAEDEDEAEE 200
Query: 461 EELARAVQNAAIT-EGEEK---KDDKAIEPPMDP-NVKGIPDFWYNIFRNVSMLSEMMQE 625
+E A + + ++ E EEK D++ IE P + KGIP+FW +NV +LSEM+QE
Sbjct: 201 KEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQE 260
Query: 626 HDEPILKCLQDIKV------------QMHEDPISFTLEFYFAPNEYFTN 736
HDEPILK L D++V P+ F LEF+F PN +FTN
Sbjct: 261 HDEPILKHLHDVRVIFTGPESTNTTQYPQPTPMGFVLEFHFTPNPFFTN 309
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 524 KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 634
+ I+PP+ P K +PD ++ R + LS + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 440 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKG-IPDFWYNIFRNVSMLSEM 616
+R ++EE A QN+ I + + D I N+KG + D W I + S L +
Sbjct: 215 YRRSAKKEEQKEAAQNSKILALQSQVSDLGIAMEAGLNIKGEVTDGWNEIKKAASGLRYI 274
Query: 617 MQEHDE 634
+ + DE
Sbjct: 275 IFKMDE 280
>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
Length = 667
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 245 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 147
V +PS +HE D PL F +GS + T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239
>SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)
Length = 675
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 95 RHQNVRRYPYLIFHSHRRQNFPKRKMAT*PS 3
RHQ ++ + L++H +R NF +R A P+
Sbjct: 217 RHQYIQEFGALVYHWRQRDNFCRRNNARRPA 247
>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
Length = 1119
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 494 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 595
+TE +E+K+DKA IE P + + ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 404 TYEPNDDECLNPWRDDTEEEEL 469
TYE D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289
>SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 238
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 440 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIP-DFWYNIFRNVSMLSEM 616
W+ E R ++NA + + K+ KA++P +D + P Y + + +EM
Sbjct: 38 WKLPIPAELTTRTIRNAQVWYQDTSKETKAVDPSLDSSSSSEPMQQLYLQQQQIKTAAEM 97
Query: 617 MQEH 628
+ H
Sbjct: 98 EKNH 101
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 407 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 502
+ N D+C+N + T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500
>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
Length = 477
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 466 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 326
LFF +T +F + FI + F K + F++ F CMYF
Sbjct: 13 LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,565,290
Number of Sequences: 59808
Number of extensions: 465203
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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