Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0049
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              206   9e-54
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             28   7.1  
SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)                  28   7.1  
SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)                     27   9.4  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  206 bits (504), Expect = 9e-54
 Identities = 97/139 (69%), Positives = 116/139 (83%), Gaps = 2/139 (1%)
 Frame = +1

Query: 10  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 189
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 190 RRFNGGVGRCAQAKQFGT--TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQ 363
           R++NGGVGR AQAK      +QGRWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQ
Sbjct: 61  RKYNGGVGRKAQAKNLKVPGSQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQ 120

Query: 364 VNRAPFLRRRTYRAHGRIN 420
           VN AP +RRRTYRAHGRIN
Sbjct: 121 VNEAPSMRRRTYRAHGRIN 139


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 262 KKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPFLRRRTY 399
           ++ A++ + +L + E N     LD+D  + DH  V    F   R Y
Sbjct: 834 RRVADYKVNILNDPEDNKKLLVLDIDYTLFDHRSVAETGFELMRPY 879


>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
          Length = 1155

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -1

Query: 401 RYVRLRRKGARFT*MWSITSLSTSKVLLSAFDSAFLNNCKRNSADFLGQ--RPCVVPNCF 228
           R   L+ KGA    + S   L+  K   + F SA  N    N   +LG   +P +  N F
Sbjct: 398 RAENLKGKGALN--LMSNMELAGDKTPSARFGSAIANAGDLNQDGYLGGYGQPGIADNIF 455

Query: 227 A*AQRPTPPLKRRNGIHS 174
               R T PLKR   +HS
Sbjct: 456 ----RYTNPLKRETSVHS 469


>SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)
          Length = 120

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 171 LFNHVFEVTNSTTERHLSDCHCGLICVLKVNTEV*TTRFA 52
           L +H+ +V+++       D   GL+C L ++ E+  T+FA
Sbjct: 6   LLDHLLDVSSAYLAEEALDMPIGLVCRLVLSDEMFVTQFA 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,508
Number of Sequences: 59808
Number of extensions: 392674
Number of successful extensions: 1149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)