Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0046
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)              241   5e-64
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         29   2.8  
SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)                 28   6.4  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    28   6.4  
SB_53702| Best HMM Match : CUT (HMM E-Value=7.6)                       28   8.4  
SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)              28   8.4  

>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score =  241 bits (589), Expect = 5e-64
 Identities = 111/199 (55%), Positives = 151/199 (75%)
 Frame = +1

Query: 103 MVIYGIYIVSKSGGLIYNYDHNIPRVETEKTFGFPLDIKLQYENKKVVVAFGQRDGINVG 282
           M I+ +YI++++GGLIY++DH  P+ E EKT+ +PL+I L+ ++K  V+ FG RD +   
Sbjct: 1   MAIFSVYILNRAGGLIYHFDHYTPKSEVEKTYSYPLEITLRGDDKLEVI-FGARDNVK-- 57

Query: 283 HVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLKFGRVRATTNEKIVLASMFYPLFA 462
               ++NG  V GR   D  DV + +  KENYP+SLKFGR +  TNE+I+LASMF+PLFA
Sbjct: 58  ----AINGENVVGRKLPDGTDVMEFLANKENYPISLKFGRAKLKTNERIMLASMFHPLFA 113

Query: 463 LASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKRIYELYSDY 642
           +A++LSP  +SSGIE L AD+FKL CFQ++TG+KFI++TD    G D +LK+IYELY D+
Sbjct: 114 IAAKLSPEQRSSGIEVLEADSFKLHCFQSMTGLKFIVLTDPRQVGMDGLLKKIYELYGDF 173

Query: 643 ALKNPFYSLEMPIRCELFD 699
           ALKNPFYSL+MPIRCELFD
Sbjct: 174 ALKNPFYSLDMPIRCELFD 192


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 472 QLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTD 582
           QLS I +  G+     DTFKL+CF TL   K +  TD
Sbjct: 703 QLSVIQQLMGLYREDEDTFKLACF-TLEYAKILQTTD 738


>SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 295 SVNGSPVTGRTTEDNRDVFDIIEAK 369
           SV+G+ +   T  D RD+FDI+E +
Sbjct: 17  SVSGAILDSNTKHDGRDLFDILEGR 41


>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
          Length = 431

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +1

Query: 418 NEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCF-QTLTGVKFIIVTDTNMQ 594
           N + VL       F   S++SP   S  ++ LT     LS    TLT V ++++TD   Q
Sbjct: 125 NPRSVLKKNVTMTFDHNSKISPTD-SFVLDLLTYIGISLSLLGSTLTIVAYLLLTDRTCQ 183

Query: 595 GTDVVLKRIYELYSDYAL 648
            T + +  ++ L++ + L
Sbjct: 184 QTQIRVNLVFSLWAAHLL 201


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 26/97 (26%), Positives = 42/97 (43%)
 Frame = +1

Query: 265 DGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLKFGRVRATTNEKIVLASM 444
           D + +G  LL VNG  ++GRT  D   +F       + P  +K    R     K +L S+
Sbjct: 162 DCVRIGDELLEVNGHKLSGRTHADALTIF------RSLPSVIKLVVFRNKDGNKTLLGSL 215

Query: 445 FYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLT 555
             P   +A++    P  +  +  +A   K S  +T T
Sbjct: 216 RKPPEDVANRPEGDPNITSPQKRSAR--KRSIMETTT 250


>SB_53702| Best HMM Match : CUT (HMM E-Value=7.6)
          Length = 284

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 243 CCGIWPKRWNKCWTCITISKWISSDRKN 326
           CC      WN+  +CI    W S DR N
Sbjct: 166 CCARPRPYWNQATSCIMADWWSSFDRNN 193


>SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)
          Length = 547

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 243 CCGIWPKRWNKCWTCITISKWISSDRKN 326
           CC      WN+  +CI    W S DR N
Sbjct: 23  CCARPRPYWNQATSCIMADWWSSFDRNN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,940,778
Number of Sequences: 59808
Number of extensions: 419260
Number of successful extensions: 1064
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)