Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0044
(674 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 2.6
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 29 3.4
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 28 6.0
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_50069| Best HMM Match : tRNA-synt_1c (HMM E-Value=3e-31) 28 7.9
SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2) 28 7.9
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 28 7.9
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 28 7.9
SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07) 28 7.9
SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44) 28 7.9
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 34.7 bits (76), Expect = 0.069
Identities = 34/111 (30%), Positives = 47/111 (42%)
Frame = +1
Query: 130 TSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRA 309
TS P T ++ P++ P + TTT S P + T S A ST+TPR
Sbjct: 50 TSAPSTSTTSNSTTRAPSTSTPR---AGSTTTTSAPSTSTPRTGSTTTTS-APSTSTPRT 105
Query: 310 LSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCT 462
S TT+ + T STT + ST T RT +T + +T T
Sbjct: 106 GSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITL--RTSTTSVMTTTPST 154
Score = 33.5 bits (73), Expect = 0.16
Identities = 30/91 (32%), Positives = 38/91 (41%)
Frame = +1
Query: 190 RPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTC 369
R T + TT+ S P + T S A ST+TPR S TT+ + T STT
Sbjct: 6 RSTPGTTSITTSTSTPSTSTPRAGSTTNTS-APSTSTPRTGSTTTTSAPSTSTTSNSTTR 64
Query: 370 QDACDVELIPSTPTRHGRTISTGWLPSTGCT 462
+ ST T + ST P TG T
Sbjct: 65 APSTSTPRAGSTTTTSAPSTST---PRTGST 92
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 33.1 bits (72), Expect = 0.21
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 RLPLPACPSRDL--RLLPAPYLCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQGMAGPS 430
RLP PSR L R LP+ +LPS RL LP + + W S R P G PS
Sbjct: 204 RLPSGWLPSRRLPSRRLPSG----RLPS-RRLPSGRLPSGRLPSRWLPSRRLPSGCL-PS 257
Query: 431 RQAGCHR-PAVPISLRTLPKGPGLPHHRL 514
R+ R P+ + R LP G LP RL
Sbjct: 258 RRLPSGRLPSGRLPSRRLPSG-RLPSRRL 285
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 56 WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLP 199
W+ RD+ +S I AVL KR ++ R K N ++FS P
Sbjct: 4708 WKSRDSDSDSSIDAVLDEMEKRRAGYEDRRKSFENLKRKFSEPSCTSP 4755
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Frame = +1
Query: 148 GTGQHAAAFFPNSC-RPTLTPSRFTTTLSLPLRGLRYPATVTCLS--IARSTATPRALSM 318
G +A F N + T+ P + TL G Y V + + TP +
Sbjct: 1536 GNSSYAHQIFVNGAPQRTIRPGTYQHTLMDLEPGQHYRVHVRARTSQFSLDENTPPSDDD 1595
Query: 319 PTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPST 453
P T+ A+ T + DV L+PS P ++ W+P T
Sbjct: 1596 PLTS-AVEFATEKGGLPDAPLDVTLLPSAPDNAPNSMEVAWMPVT 1639
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 29.1 bits (62), Expect = 3.4
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +1
Query: 181 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRAL-SMPTTTLALSIITGQ 357
+SC T TPS TT SL L A+ L ++ ++ A+ S + L+L+I G
Sbjct: 204 SSCALTTTPSCALTTTSLHPGTLATFASSPSLPVSPLVSSHSAIPSRAKSPLSLTISDGD 263
Query: 358 S-TTCQDA-CDVELIPSTPTRHGRTISTGWLP 447
S +TC + ++ I S P++ + ST P
Sbjct: 264 SASTCSEVKSPIDKIRSMPSKSLSSESTTGSP 295
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = +1
Query: 196 TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 375
T T + +T T++ P P T + +T TP A TTT + T +TT
Sbjct: 97 TATITTYTATVTAPNATTTTPTATTTTTTTTTTTTPYA----TTTTPNTTTTTPNTTTTS 152
Query: 376 ACDVELIPSTPTRHGRTIST 435
P+T T T +T
Sbjct: 153 PNATTTTPNTTTTTPNTTTT 172
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 256 PATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHG--RTI 429
P T + S + +TPR S P+T S + ST + PSTP H
Sbjct: 15 PCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPS-----TPSTPCTHSTPSAP 69
Query: 430 STGWLPSTGCT 462
ST PST CT
Sbjct: 70 STPSTPSTPCT 80
Score = 27.9 bits (59), Expect = 7.9
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 178 PNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 357
P++ TPS +T S P+ P+T + S + TP LS P+T S +
Sbjct: 144 PSTPSTPSTPST-PSTPSTPITP-GTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTRSTP 201
Query: 358 STTCQDACDVEL-IPSTPTRHGRTISTGWLPSTGCT 462
ST + L +PSTP+ T ST PST T
Sbjct: 202 STPSTPSTPSTLSMPSTPSM-PNTPSTPSTPSTPST 236
Score = 27.9 bits (59), Expect = 7.9
Identities = 32/95 (33%), Positives = 43/95 (45%)
Frame = +1
Query: 178 PNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 357
PN+ TPS +TLS P+ P+T + + +TP SMP+T S +
Sbjct: 222 PNTPSTPSTPST-PSTLSTPIT----PSTPS------TPSTPSTPSMPSTPSTPSTPSTP 270
Query: 358 STTCQDACDVELIPSTPTRHGRTISTGWLPSTGCT 462
ST C + PSTP+ T ST PST T
Sbjct: 271 STPCTP--NTPSTPSTPSMPS-TPSTPSTPSTPST 302
Score = 27.9 bits (59), Expect = 7.9
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 178 PNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 357
PN+ TPS T S P+ P+T + S + TP LS P+T S +
Sbjct: 697 PNTPSTPSTPS----TPSTPITP-GTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTRSTP 751
Query: 358 STTCQDACDVEL-IPSTPTRHGRTISTGWLPSTGCT 462
ST + L +PSTP+ T ST PST T
Sbjct: 752 STPSTPSTPSTLSMPSTPSM-PNTPSTPSTPSTPST 786
Score = 27.9 bits (59), Expect = 7.9
Identities = 32/95 (33%), Positives = 43/95 (45%)
Frame = +1
Query: 178 PNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 357
PN+ TPS +TLS P+ P+T + + +TP SMP+T S +
Sbjct: 772 PNTPSTPSTPST-PSTLSTPIT----PSTPS------TPSTPSTPSMPSTPSTPSTPSTP 820
Query: 358 STTCQDACDVELIPSTPTRHGRTISTGWLPSTGCT 462
ST C + PSTP+ T ST PST T
Sbjct: 821 STPCTP--NTPSTPSTPSMPS-TPSTPSTPSTPST 852
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 401 RRPQGMAGPSRQAGCHRPAVPISLRTLPKGP 493
RRPQ A P + HR + + RT P+ P
Sbjct: 55 RRPQTTAAPDNRGNTHRRQITAATRTGPRQP 85
>SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 68 DAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLL 205
D E+ + +R F++ +GR + V+ANT + P L +L
Sbjct: 147 DETEDRRRAETMREFTREYGRGVRQANVRANTKKLTGTLPYSLSML 192
>SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 199 LTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 339
L P RF + L R R+P ++ S ST R S P + +L
Sbjct: 346 LNPKRFWSIFKLKSRDFRFPGIMSIGSAENSTQPARLASTPASIASL 392
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +1
Query: 220 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTT-CQDACDVELI 396
T+ ++P+ PAT ++A STAT +++ + + ++ +T STT V
Sbjct: 282 TSTTVPVSSHVTPATGCNTTMATSTATVQSIDTEQSPIVITSVTPPSTTMVPQKASVATS 341
Query: 397 PSTPTRHGR----TISTGWLPSTGCT 462
P+T R ++++ +PS T
Sbjct: 342 PTTTVHFQRLEKPSVASSLMPSPDST 367
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 28.3 bits (60), Expect = 6.0
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Frame = +2
Query: 134 QSRGKVQANTPQRFSRTP-VDLPLLQVDLR-RPYRCR*EDYGTRLPLPACPSRDLRLLPA 307
+S Q P++ P + LPL D + RP + +PLP PS LP+
Sbjct: 114 ESLSSKQGTPPRKALHPPKMQLPLTSSDPQTRPAMPLPSPSRSEMPLPPTPSSSSESLPS 173
Query: 308 PYLCPQLPSLSR----LLQANLPRAKTRATWS*SLRRPQGMAGPSRQAGCHRPA 457
P P SR L+++N +K+ RP G SR + P+
Sbjct: 174 GTKSPTKPLRSRSSDELVKSNSESSKSNPV-PRPRNRPPPPPGASRSSASKEPS 226
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 196 TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 375
T T + TTT + AT+T + +T T + TTT + T +TT ++
Sbjct: 6 TTTTTTTTTTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTKN 65
Query: 376 ACDVELIPST 405
D + + +T
Sbjct: 66 NDDDDDVLAT 75
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 259 ATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPT 411
ATVT + A +TAT A + TT A + T +T A + +T T
Sbjct: 691 ATVTATATATATATATATAATTTATATATATVTATVTAAASATAAVTATVT 741
>SB_50069| Best HMM Match : tRNA-synt_1c (HMM E-Value=3e-31)
Length = 210
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 486 KDRAYPITDFTAPLIDPLK--PKSLKGIEY-EPDNKPHW 593
K + YPI DF P++D L+ +L+ EY + D + +W
Sbjct: 45 KYKVYPIYDFACPIVDSLEGVTHALRTTEYHDRDPQYYW 83
>SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2)
Length = 391
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 462 PSRYGLYLKDRAYPITDFTAPLIDPLKPKSLKGIEYEPDNKPHWGTA 602
P R GLY T P+ +P + GI+ D PH GTA
Sbjct: 260 PIRLGLYQLVGEISDVGTTKPIAEPTEMLWEAGIKLVADGSPHCGTA 306
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 181 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIA--RSTATPRALSMPTTTLALSIITG 354
N+ TLT + T S + P TVT ++A ST+ A S TL + IT
Sbjct: 1818 NTRNATLTLTHHKTETSTAVAMTTVPHTVTTTAVALVNSTSVVMATSTAVATLTSTHITT 1877
Query: 355 QSTT 366
Q+ T
Sbjct: 1878 QTNT 1881
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Frame = +1
Query: 193 PTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQSTTC 369
P T + TTT L + + +T P P TTLA + I ++T
Sbjct: 476 PVTTMAPDTTTSPATTAALETTMVPETTAASDTTVVPETTDAPATTLAPKTTIAPETTVA 535
Query: 370 QDACDVELIPSTP 408
Q+ D I P
Sbjct: 536 QETTDAPAITMAP 548
>SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)
Length = 213
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 146 KVQANTPQRFSRTPVDLPLLQVDLR 220
KV AN P +F RTP+ +L+ D+R
Sbjct: 140 KVDANLPGQFGRTPLHNAVLKGDMR 164
>SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44)
Length = 572
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 462 PSRYGLYLKDRAYPITDFTAPLIDPLKPKSLKGIEYEPDNKPHWGTA 602
P R GLY T P+ +P + GI+ D PH GTA
Sbjct: 260 PIRLGLYQLVGEISDVGTTKPIAEPTEMLWEAGIKLVADGSPHCGTA 306
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,524,721
Number of Sequences: 59808
Number of extensions: 523292
Number of successful extensions: 1908
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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