Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0042
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23012| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)              27   9.5  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     27   9.5  

>SB_23012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 398 KISLYFELNQYIFMHLIIRTKKSLLYNKTTR*FELIGVQRSTIQRYRE 541
           K+ L+ +  +Y F+H   RTKKS      T+ +   G Q S  +R  E
Sbjct: 30  KLDLHVKFQEYTFLHSNTRTKKSRYNQSNTKAWVTCGEQNSNDRRGEE 77


>SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 316 GVKWLLEPIDIYNVNAPPTSRYKFQDLSIA-TTATPP 209
           G+ W+++ ID++ V+ P     K+ D  +A  +A PP
Sbjct: 4   GILWVVQSIDLWLVSRPTEGTMKYSDRHLAGLSARPP 40


>SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)
          Length = 398

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -1

Query: 298 EPIDIYNVNAPPTSRYKFQDLSIATTATPPFEPKRIIAIERF*LSQVGINESRRLY 131
           E +  +N+++  T+    +DLS   T+TP  E +   +I+R  LS   +++SR  Y
Sbjct: 28  ELVPTHNISSASTTS-SHEDLSSVHTSTPKSEQRHGFSIKREHLSCDTVSQSRSPY 82


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  DDLEQDLMSRKIYIYSRRLSLIPTCDN*NLSIAIMRFGSKGGVAVVAIL 236
           DD E      +  IY+ R +LIP CD    S+  +R  S+  +A + +L
Sbjct: 686 DDSESSWTDTETRIYAARSNLIPVCD----SLFSVRTASRENLAKIPLL 730


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,094
Number of Sequences: 59808
Number of extensions: 377582
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)